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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11423073   arogenate dehydrogenase 1, chloroplastic 
 mtr-r.5   11423073   arogenate dehydrogenase 1, chloroplastic 
 mtr-m.5   11423073   arogenate dehydrogenase 1, chloroplastic 
 mtr-u.5   11415867   arogenate dehydrogenase 1, chloroplastic 
 mtr-u.5   11445490   arogenate dehydrogenase 1, chloroplastic 
 gma-u.5   PDH1   prephenate dehydrogenase 1 
 gma-u.5   ADH1   arogenate dehydrogenase 1, chloroplastic-like 
 gma-u.5   TYRA-A   arogenate dehydrogenase 2 
 ppo-u.5   18099902   arogenate dehydrogenase 1, chloroplastic 
 ppo-u.5   7472451   arogenate dehydrogenase 1, chloroplastic 
 ppo-u.5   18094861   arogenate dehydrogenase 2, chloroplastic 
 ath-u.5   AT5G34930   arogenate dehydrogenase 
 ath-u.5   AT1G15710   prephenate dehydrogenase family protein 
 vvi-u.5   100263817   arogenate dehydrogenase 1, chloroplastic 
 vvi-u.5   104877397   arogenate dehydrogenase 2, chloroplastic 
 sly-u.5   101259263   arogenate dehydrogenase 2, chloroplastic 
 sly-u.5   101259361   arogenate dehydrogenase 2, chloroplastic-like 
 sly-u.5   101264432   arogenate dehydrogenase 1, chloroplastic 
 osa-u.5   4341232   arogenate dehydrogenase 2, chloroplastic 
 osa-u.5   4342026   arogenate dehydrogenase 2, chloroplastic 
 osa-u.5   107277437   arogenate dehydrogenase 2, chloroplastic 
 zma-u.5   100284089   arogenate dehydrogenase 
 zma-u.5   100281078   arogenate dehydrogenase 
 zma-u.5   100281038   arogenate dehydrogenase 

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Top 50 coexpressed genes to 11423073 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11423073 (mtr-u.5 coexpression data)

CoexMap"11423073"


mtrLOC11423073 | Entrez gene ID : 11423073      
Species mtr gma ppo ath vvi sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 5 3 3 2 2 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG mtr00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (40 genes)
mtr01230 [list] [network] Biosynthesis of amino acids (227 genes)
GO BP
GO:0006571 [list] [network] L-tyrosine biosynthetic process  (3 genes)  IEA  
GO CC
GO MF
GO:0004665 [list] [network] prephenate dehydrogenase (NADP+) activity  (3 genes)  IEA  
GO:0008977 [list] [network] prephenate dehydrogenase (NAD+) activity  (3 genes)  IEA  
GO:0033730 [list] [network] arogenate dehydrogenase (NADP+) activity  (3 genes)  IEA  
GO:0070403 [list] [network] NAD+ binding  (13 genes)  IEA  
Protein XP_003616719.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 1  (predict for XP_003616719.1)
Subcellular
localization
TargetP
other 4  (predict for XP_003616719.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11423073
mtr-r.5
for
11423073
mtr-m.5
for
11423073
mtr-u.5
for
11415867
mtr-u.5
for
11445490
gma-u.5
for
PDH1
gma-u.5
for
ADH1
gma-u.5
for
TYRA-A
ppo-u.5
for
18099902
ppo-u.5
for
7472451
ppo-u.5
for
18094861
ath-u.5
for
AT5G34930
ath-u.5
for
AT1G15710
vvi-u.5
for
100263817
vvi-u.5
for
104877397
sly-u.5
for
101259263
sly-u.5
for
101259361
sly-u.5
for
101264432
osa-u.5
for
4341232
osa-u.5
for
4342026
osa-u.5
for
107277437
zma-u.5
for
100284089
zma-u.5
for
100281078
zma-u.5
for
100281038


Ortholog ID: 1881
Species mtr mtr gma gma ppo ppo ath ath bra bra ghi ghi bna bna cit cit sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC11415867 LOC11423073 ADH1 TYRA-A LOC18094861 LOC7472451 AT5G34930 AT1G15710 LOC103842888 LOC103858107 LOC107906447 LOC107901339 LOC106414620 LOC111200313 LOC102624096 LOC102607475 LOC101264432 LOC101259361 LOC102605098 LOC102587993 LOC107813162 LOC107764315 LOC4342026 LOC107277437 LOC100276497 LOC100284089 LOC123163666 LOC123169064 LOC123408896 LOC123407447 LOC8064968 LOC8064969 LOC100829970 LOC100828973 CHLRE_06g278350v5
Function* arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 1, chloroplastic-like arogenate dehydrogenase 2 arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase prephenate dehydrogenase family protein arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 2, chloroplastic-like arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 2, chloroplastic-like arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 2, chloroplastic-like arogenate dehydrogenase 1, chloroplastic-like arogenate dehydrogenase 2, chloroplastic-like arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 1, chloroplastic arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 2, chloroplastic uncharacterized LOC100276497 arogenate dehydrogenase arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 2, chloroplastic-like arogenate dehydrogenase 2, chloroplastic-like arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 2, chloroplastic arogenate dehydrogenase 2, chloroplastic-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00620 Pyruvate metabolism 8
gma01200 Carbon metabolism 8
gma01230 Biosynthesis of amino acids 6
gma00010 Glycolysis / Gluconeogenesis 6
gma00061 Fatty acid biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 3
gma03082 ATP-dependent chromatin remodeling 2
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
gma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 3
ath00564 Glycerophospholipid metabolism 2
ath00710 Carbon fixation by Calvin cycle 2
ath01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 9
bra01200 Carbon metabolism 8
bra00710 Carbon fixation by Calvin cycle 7
bra00010 Glycolysis / Gluconeogenesis 4
bra00030 Pentose phosphate pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
bna01230 Biosynthesis of amino acids 3
bna00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
bna01230 Biosynthesis of amino acids 3
bna00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 9
cit00620 Pyruvate metabolism 8
cit00010 Glycolysis / Gluconeogenesis 6
cit01240 Biosynthesis of cofactors 6
cit00020 Citrate cycle (TCA cycle) 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 3
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00360 Phenylalanine metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
nta01230 Biosynthesis of amino acids 7
nta00270 Cysteine and methionine metabolism 4
nta00670 One carbon pool by folate 4
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04146 Peroxisome 2
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 8
osa03050 Proteasome 6
osa00270 Cysteine and methionine metabolism 5
osa01200 Carbon metabolism 4
osa00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae03040 Spliceosome 3
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
tae01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00920 Sulfur metabolism 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 13
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
sbi00940 Phenylpropanoid biosynthesis 3
sbi00670 One carbon pool by folate 3
sbi01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 7
sbi00670 One carbon pool by folate 3
sbi01240 Biosynthesis of cofactors 3
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
sbi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 3
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 11415867 11423073 100801552 100803931 18094861 7472451 833436 838140 103842888 103858107 107906447 107901339 106414620 111200313 102624096 102607475 101264432 101259361 102605098 102587993 107813162 107764315 4342026 107277437 100276497 100284089 123163666 123169064 123408896 123407447 8064968 8064969 100829970 100828973 5720883
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