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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11427347   cryptochrome DASH, chloroplastic/mitochondrial 
 mtr-r.5   11427347   cryptochrome DASH, chloroplastic/mitochondrial 
 mtr-m.5   11427347   cryptochrome DASH, chloroplastic/mitochondrial 
 gma-u.5   100783312   cryptochrome DASH, chloroplastic/mitochondrial 
 ath-u.5   CRY3   cryptochrome 3 
 bra-r.6   103874351   cryptochrome DASH, chloroplastic/mitochondrial 
 bra-r.6   103837069   cryptochrome DASH, chloroplastic/mitochondrial 
 vvi-u.5   100252689   cryptochrome DASH, chloroplastic/mitochondrial 
 ghi-r.1   107961766   cryptochrome DASH, chloroplastic/mitochondrial 
 ghi-r.1   107902007   cryptochrome DASH, chloroplastic/mitochondrial 
 bna-r.1   125577721   cryptochrome DASH, chloroplastic/mitochondrial-like 
 bna-r.1   106381064   cryptochrome DASH, chloroplastic/mitochondrial 
 bna-r.1   106348498   cryptochrome DASH, chloroplastic/mitochondrial-like 
 cit-r.1   102612082   cryptochrome DASH, chloroplastic/mitochondrial 
 sly-u.5   Cry3   cryptochrome DASH, chloroplastic/mitochondrial-like 
 sot-r.1   102585633   cryptochrome DASH, chloroplastic/mitochondrial 
 nta-r.1   107788282   cryptochrome DASH, chloroplastic/mitochondrial 
 nta-r.1   107782681   cryptochrome DASH, chloroplastic/mitochondrial 
 osa-u.5   4341749   cryptochrome DASH, chloroplastic/mitochondrial-like 
 zma-u.5   100280309   uncharacterized LOC100280309 
 tae-r.2   123164714   cryptochrome DASH, chloroplastic/mitochondrial 
 tae-r.2   123157423   cryptochrome DASH, chloroplastic/mitochondrial 
 tae-r.2   123149308   cryptochrome DASH, chloroplastic/mitochondrial 
 hvu-r.1   123413527   cryptochrome DASH, chloroplastic/mitochondrial 
 sbi-r.1   8069379   cryptochrome DASH, chloroplastic/mitochondrial 
 bdi-r.1   100845878   cryptochrome DASH, chloroplastic/mitochondrial 
 cre-r.1   CHLRE_02g078939v5   uncharacterized protein 

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Top 50 coexpressed genes to 11427347 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11427347 (mtr-u.5 coexpression data)

CoexMap"11427347"


mtrLOC11427347 | Entrez gene ID : 11427347      
Species mtr gma ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre ppo
Paralog 3 1 1 2 1 2 3 1 1 1 2 1 1 3 1 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000719 [list] [network] photoreactive repair  (3 genes)  IEA  
GO CC
GO MF
GO:0003904 [list] [network] deoxyribodipyrimidine photo-lyase activity  (7 genes)  IEA  
GO:0071949 [list] [network] FAD binding  (85 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2104 genes)  IEA  
Protein XP_003603523.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  nucl 1,  plas 1,  extr 1,  nucl_plas 1  (predict for XP_003603523.2)
Subcellular
localization
TargetP
chlo 8  (predict for XP_003603523.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11427347
mtr-r.5
for
11427347
mtr-m.5
for
11427347
gma-u.5
for
100783312
ath-u.5
for
CRY3
bra-r.6
for
103874351
bra-r.6
for
103837069
vvi-u.5
for
100252689
ghi-r.1
for
107961766
ghi-r.1
for
107902007
bna-r.1
for
125577721
bna-r.1
for
106381064
bna-r.1
for
106348498
cit-r.1
for
102612082
sly-u.5
for
Cry3
sot-r.1
for
102585633
nta-r.1
for
107788282
nta-r.1
for
107782681
osa-u.5
for
4341749
zma-u.5
for
100280309
tae-r.2
for
123164714
tae-r.2
for
123157423
tae-r.2
for
123149308
hvu-r.1
for
123413527
sbi-r.1
for
8069379
bdi-r.1
for
100845878
cre-r.1
for
CHLRE_02g078939v5


Ortholog ID: 9694
Species mtr gma ath bra bra vvi ghi ghi bna bna bna cit sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC11427347 LOC100783312 CRY3 LOC103874351 LOC103837069 LOC100252689 LOC107961766 LOC107902007 LOC125577721 LOC106381064 LOC106348498 LOC102612082 Cry3 LOC102585633 LOC107788282 LOC107782681 LOC4341749 LOC100280309 LOC123164714 LOC123157423 LOC123149308 LOC123413527 LOC8069379 LOC100845878 CHLRE_02g078939v5
Function* cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome 3 cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial-like cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial-like cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial-like cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial-like uncharacterized LOC100280309 cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 2
gma00941 Flavonoid biosynthesis 2
gma00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
ath00940 Phenylpropanoid biosynthesis 2
ath00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 4
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 4
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00760 Nicotinate and nicotinamide metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00941 Flavonoid biosynthesis 4
bdi00940 Phenylpropanoid biosynthesis 3
bdi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 11427347 100783312 832554 103874351 103837069 100252689 107961766 107902007 125577721 106381064 106348498 102612082 101248230 102585633 107788282 107782681 4341749 100280309 123164714 123157423 123149308 123413527 8069379 100845878 5727263
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