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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11432370   RNA polymerase sigma factor sigF, chloroplastic 
 mtr-r.5   11432370   RNA polymerase sigma factor sigF, chloroplastic 
 mtr-m.5   11432370   RNA polymerase sigma factor sigF, chloroplastic 
 mtr-u.5   11434136   RNA polymerase sigma factor sigF, chloroplastic 
 gma-u.5   100793539   RNA polymerase sigma factor sigF, chloroplastic 
 gma-u.5   100782822   RNA polymerase sigma factor sigF, chloroplastic 
 gma-u.5   100778636   RNA polymerase sigma factor sigF, chloroplastic 
 ppo-u.5   18100169   RNA polymerase sigma factor sigF, chloroplastic 
 ath-u.5   SIGF   RNApolymerase sigma-subunit F 
 bra-r.6   103865571   RNA polymerase sigma factor sigF, chloroplastic 
 vvi-u.5   100267110   RNA polymerase sigma factor sigF, chloroplastic 
 ghi-r.1   121206201   RNA polymerase sigma factor sigF, chloroplastic 
 ghi-r.1   107948374   RNA polymerase sigma factor sigF, chloroplastic 
 ghi-r.1   107935100   RNA polymerase sigma factor sigF, chloroplastic 
 bna-r.1   125584278   RNA polymerase sigma factor sigF, chloroplastic-like 
 bna-r.1   125585653   RNA polymerase sigma factor sigF, chloroplastic-like 
 bna-r.1   106391499   RNA polymerase sigma factor sigF, chloroplastic 
 cit-r.1   102608402   RNA polymerase sigma factor sigF, chloroplastic 
 sly-u.5   101267154   RNA polymerase sigma factor sigF, chloroplastic 
 sot-r.1   102599838   RNA polymerase sigma factor sigF, chloroplastic 
 nta-r.1   107790542   RNA polymerase sigma factor sigF, chloroplastic 
 nta-r.1   107807763   RNA polymerase sigma factor sigF, chloroplastic 
 osa-u.5   4345044   RNA polymerase sigma factor sigF, chloroplastic 
 zma-u.5   542484   sigma-like factor 6 
 tae-r.2   123123907   RNA polymerase sigma factor sigF, chloroplastic 
 tae-r.2   123114472   RNA polymerase sigma factor sigF, chloroplastic 
 tae-r.2   123087460   RNA polymerase sigma factor sigF, chloroplastic 
 hvu-r.1   123395233   RNA polymerase sigma factor sigF, chloroplastic 
 sbi-r.1   110431995   RNA polymerase sigma factor sigF, chloroplastic 
 bdi-r.1   100832494   RNA polymerase sigma factor sigF, chloroplastic 

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Top 50 coexpressed genes to 11432370 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11432370 (mtr-u.5 coexpression data)

CoexMap"11432370"


mtrLOC11432370 | Entrez gene ID : 11432370      
Species mtr gma ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 1 1 1 1 3 3 1 1 1 2 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006352 [list] [network] DNA-templated transcription initiation  (78 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1635 genes)  IEA  
GO CC
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1100 genes)  IEA  
Protein XP_003625673.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  cyto_nucl 3  (predict for XP_003625673.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_003625673.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11432370
mtr-r.5
for
11432370
mtr-m.5
for
11432370
mtr-u.5
for
11434136
gma-u.5
for
100793539
gma-u.5
for
100782822
gma-u.5
for
100778636
ppo-u.5
for
18100169
ath-u.5
for
SIGF
bra-r.6
for
103865571
vvi-u.5
for
100267110
ghi-r.1
for
121206201
ghi-r.1
for
107948374
ghi-r.1
for
107935100
bna-r.1
for
125584278
bna-r.1
for
125585653
bna-r.1
for
106391499
cit-r.1
for
102608402
sly-u.5
for
101267154
sot-r.1
for
102599838
nta-r.1
for
107790542
nta-r.1
for
107807763
osa-u.5
for
4345044
zma-u.5
for
542484
tae-r.2
for
123123907
tae-r.2
for
123114472
tae-r.2
for
123087460
hvu-r.1
for
123395233
sbi-r.1
for
110431995
bdi-r.1
for
100832494


Ortholog ID: 7177
Species mtr mtr gma gma gma ppo ath bra vvi ghi ghi ghi bna bna bna cit sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC11432370 LOC11434136 LOC100778636 LOC100306289 LOC100815699 LOC18100169 SIGF LOC103865571 LOC100267110 LOC107948374 LOC107935100 LOC107899472 LOC125584278 LOC125585653 LOC106391499 LOC102608402 LOC101267154 LOC102599838 LOC107790542 LOC107807763 LOC4345044 LOC542484 LOC123123907 LOC123114472 LOC123087460 LOC123395233 LOC110431995 LOC100832494
Function* RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNApolymerase sigma-subunit F RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic-like RNA polymerase sigma factor sigF, chloroplastic-like RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic sigma-like factor 6 RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic RNA polymerase sigma factor sigF, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00460 Cyanoamino acid metabolism 2
mtr00500 Starch and sucrose metabolism 2
mtr00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00561 Glycerolipid metabolism 2
gma00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 3
vvi00860 Porphyrin metabolism 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 8
ghi00860 Porphyrin metabolism 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi00860 Porphyrin metabolism 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 7
zma00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 5
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
tae00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
tae00710 Carbon fixation by Calvin cycle 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00010 Glycolysis / Gluconeogenesis 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00900 Terpenoid backbone biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 11432370 11434136 100778636 100306289 100815699 18100169 818273 103865571 100267110 107948374 107935100 107899472 125584278 125585653 106391499 102608402 101267154 102599838 107790542 107807763 4345044 542484 123123907 123114472 123087460 123395233 110431995 100832494
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