ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	11438455	chaperone protein ClpC, chloroplastic
mtr-r.5	11438455	chaperone protein ClpC, chloroplastic
mtr-m.5	11438455	chaperone protein ClpC, chloroplastic
mtr-u.5	25489942	chaperone protein ClpC, chloroplastic
mtr-u.5	25491143	chaperone protein ClpC, chloroplastic
mtr-u.5	11434548	chaperone protein ClpD, chloroplastic
gma-u.5	100801296	chaperone protein ClpB3, chloroplastic
gma-u.5	100804035	chaperone protein ClpC, chloroplastic
gma-u.5	100814891	chaperone protein ClpC, chloroplastic
ppo-u.5	7456671	chaperone protein ClpD, chloroplastic
ppo-u.5	7456642	chaperone protein ClpC, chloroplastic
ath-u.5	HSP101	heat shock protein 101
ath-u.5	ERD1	Clp ATPase
ath-u.5	CLPC1	CLPC homologue 1
vvi-u.5	100250896	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic
vvi-u.5	100252611	chaperone protein ClpB3, chloroplastic
vvi-u.5	100247399	chaperone protein ClpB4, mitochondrial
sly-u.5	101248184	chaperone protein ClpD, chloroplastic
sly-u.5	101248395	chaperone protein ClpB4, mitochondrial
sly-u.5	CD4B	ATP-dependent protease
osa-u.5	4335702	chaperone protein ClpC1, chloroplastic-like
osa-u.5	4328515	chaperone protein ClpB3, mitochondrial-like
osa-u.5	4329520	chaperone protein ClpD1, chloroplastic-like
zma-u.5	100193235	uncharacterized LOC100193235
zma-u.5	100217072	Chaperone protein ClpB4 mitochondrial
zma-u.5	100383416	uncharacterized LOC100383416

Top 50 coexpressed genes to 11438455 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 11438455 (mtr-u.5 coexpression data)

CoexMap"11438455"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0034605 [list] [network] cellular response to heat

(37 genes)

IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(4514 genes)

IEA

GO MF

GO:0016887 [list] [network] ATP hydrolysis activity	(587 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2502 genes)	IEA
GO:0005515 [list] [network] protein binding	(5045 genes)	IEA

Protein

XP_003630582.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, cyto 1, mito 1

(predict for XP_003630582.1)

Subcellular
localization
TargetP

chlo 9, mito 3

(predict for XP_003630582.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11438455	mtr-r.5 for 11438455	mtr-m.5 for 11438455	mtr-u.5 for 25489942	mtr-u.5 for 25491143	mtr-u.5 for 11434548	gma-u.5 for 100801296	gma-u.5 for 100804035	gma-u.5 for 100814891	ppo-u.5 for 7456671	ppo-u.5 for 7456642	ath-u.5 for HSP101	ath-u.5 for ERD1	ath-u.5 for CLPC1	vvi-u.5 for 100250896	vvi-u.5 for 100252611	vvi-u.5 for 100247399	sly-u.5 for 101248184	sly-u.5 for 101248395	sly-u.5 for CD4B	osa-u.5 for 4335702	osa-u.5 for 4328515	osa-u.5 for 4329520	zma-u.5 for 100193235	zma-u.5 for 100217072	zma-u.5 for 100383416

Ortholog

Ortholog ID: 158

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

CLPC1

ERD1

HSP101

CD4A

Function^*

chaperone protein ClpB3, chloroplastic

chaperone protein ClpC, chloroplastic

chaperone protein ClpB3, chloroplastic

chaperone protein ClpC, chloroplastic

CLPC homologue 1

Clp ATPase

chaperone protein ClpB3, chloroplastic

chaperone protein ClpD, chloroplastic

heat shock protein 101

ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic

chaperone protein ClpB3, chloroplastic

chaperone protein ClpD, chloroplastic

chaperone protein ClpB4, mitochondrial

chaperone protein ClpB3, chloroplastic-like

chaperone protein ClpB4, mitochondrial

chaperone protein ClpD, chloroplastic

heat shock protein

ATP-dependent protease CD4A

chaperone protein ClpB3, chloroplastic

ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic-like

ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic-like

chaperone protein ClpB1

chaperone protein ClpD1, chloroplastic-like

heat-shock protein 101

chaperone protein ClpB2, chloroplastic-like

chaperone protein ClpB3, mitochondrial

chaperone protein ClpC1, chloroplastic

chaperone protein ClpB3, mitochondrial

chaperone protein ClpC1, chloroplastic

chaperone protein ClpD1, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00860	Porphyrin metabolism	2
mtr00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	7
gma03040	Spliceosome	3
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00230	Purine metabolism	2
ath00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	4
bra03250	Viral life cycle - HIV-1	2
bra03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	11
vvi03040	Spliceosome	4
vvi04144	Endocytosis	4
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00730	Thiamine metabolism	2
ghi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	5
bna04626	Plant-pathogen interaction	5
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	8
cit04626	Plant-pathogen interaction	3
cit03040	Spliceosome	3
cit04144	Endocytosis	3
cit03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	4
sly03040	Spliceosome	2
sly04144	Endocytosis	2
sly04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	2
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	5
sot03040	Spliceosome	3
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	5
nta03040	Spliceosome	4
nta04144	Endocytosis	4
nta00053	Ascorbate and aldarate metabolism	2
nta00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00860	Porphyrin metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	12
zma03040	Spliceosome	3
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	4
zma03040	Spliceosome	2
zma04144	Endocytosis	2
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	2
hvu03040	Spliceosome	2
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	5
sbi04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01230	Biosynthesis of amino acids	3
cre00970	Aminoacyl-tRNA biosynthesis	3
cre00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

11412992

25489942

100795662

100801296

18103824

7456642

835165

835180

103846412

103857205

100232966

100250896

107960369

107931444

106389772

106372155

102622978

102614277

778327

101265014

102592268

102584342

107804165

107763527

4329520

541780

103636567

123136534

123426575

8079407

8072025

100840449

5718536

5724186

The preparation time of this page was 0.2 [sec].


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	6	3	2	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11438455 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11438455 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**