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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11444032   mediator of RNA polymerase II transcription subunit 12 
 mtr-r.5   11444032   mediator of RNA polymerase II transcription subunit 12 
 mtr-m.5   11444032   mediator of RNA polymerase II transcription subunit 12 
 mtr-u.5   11442155   mediator of RNA polymerase II transcription subunit 12 
 gma-u.5   100782672   mediator of RNA polymerase II transcription subunit 12 
 gma-u.5   100806985   mediator of RNA polymerase II transcription subunit 12 
 gma-u.5   100811040   mediator of RNA polymerase II transcription subunit 12 
 ppo-u.5   7494075   mediator of RNA polymerase II transcription subunit 12 
 ppo-u.5   18105225   mediator of RNA polymerase II transcription subunit 12 
 ath-u.5   CCT   RNA polymerase II transcription mediator 
 vvi-u.5   100263628   mediator of RNA polymerase II transcription subunit 12 
 sly-u.5   101246089   mediator of RNA polymerase II transcription subunit 12 
 osa-u.5   4349313   mediator of RNA polymerase II transcription subunit 12 
 osa-u.5   4344116   mediator of RNA polymerase II transcription subunit 12 
 zma-u.5   103630556   mediator of RNA polymerase II transcription subunit 12-like 
 zma-u.5   100384108   uncharacterized LOC100384108 

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Top 50 coexpressed genes to 11444032 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11444032 (mtr-u.5 coexpression data)

CoexMap"11444032"


mtrLOC11444032 | Entrez gene ID : 11444032      
Species mtr gma ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 3 2 1 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (425 genes)  IEA  
GO CC
GO:0016592 [list] [network] mediator complex  (47 genes)  IEA  
GO MF
GO:0003712 [list] [network] transcription coregulator activity  (162 genes)  IEA  
Protein XP_003627583.2 [sequence] [blastp]
XP_024627949.1 [sequence] [blastp]
XP_024627950.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 3,  nucl_plas 3  (predict for XP_003627583.2)
chlo 4,  nucl 4,  mito 1,  plas 1,  E.R. 1,  pero 1,  E.R._plas 1,  mito_plas 1  (predict for XP_024627949.1)
nucl 4,  plas 3,  chlo 1,  golg_plas 1,  E.R._plas 1,  cyto_plas 1  (predict for XP_024627950.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_003627583.2)
chlo 8  (predict for XP_024627949.1)
mito 4  (predict for XP_024627950.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11444032

.
mtr-r.5
for
11444032

.
mtr-m.5
for
11444032

.
mtr-u.5
for
11442155

.
gma-u.5
for
100782672

.
gma-u.5
for
100806985

.
gma-u.5
for
100811040

.
ppo-u.5
for
7494075

.
ppo-u.5
for
18105225

.
ath-u.5
for
CCT

.
vvi-u.5
for
100263628

.
sly-u.5
for
101246089

.
osa-u.5
for
4349313

.
osa-u.5
for
4344116

.
zma-u.5
for
103630556

.
zma-u.5
for
100384108

.


Ortholog ID: 5345
Species ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol CCT LOC100811040 LOC100806985 LOC101246089 LOC4344116 LOC4349313 LOC100384108 LOC103630556 LOC103858870 LOC103836919 LOC100263628 LOC18105225 LOC7494075 LOC11444032 LOC11442155 LOC123106058 LOC123093877 LOC123449956 LOC121210897 LOC107943228 LOC106434944 LOC106438592 CHLRE_12g543850v5 LOC8059520 LOC102594933 LOC102625411 LOC127898599 LOC100846378 LOC107789063 LOC107827645
Function* RNA polymerase II transcription mediator mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 uncharacterized LOC100384108 mediator of RNA polymerase II transcription subunit 12-like mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 uncharacterized protein mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12-like mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12-like mediator of RNA polymerase II transcription subunit 12
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 3
bra03082 ATP-dependent chromatin remodeling 2
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 2
bra04518 Integrin signaling 2
bra03083 Polycomb repressive complex 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo03015 mRNA surveillance pathway 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
ghi04145 Phagosome 2
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 3
ghi04070 Phosphatidylinositol signaling system 3
ghi04145 Phagosome 3
ghi00310 Lysine degradation 2
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827954 100811040 100806985 101246089 4344116 4349313 100384108 103630556 103858870 103836919 100263628 18105225 7494075 11444032 11442155 123106058 123093877 123449956 121210897 107943228 106434944 106438592 66055738 8059520 102594933 102625411 127898599 100846378 107789063 107827645
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