ATTED-II : GeneCoexpression result

Species	Gene	Description
mtr-u.5	11445200	protein RRP6-like 3
mtr-r.5	11445200	protein RRP6-like 3
mtr-m.5	11445200	protein RRP6-like 3
gma-u.5	100791485	protein RRP6-like 3
ppo-u.5	18103732	protein RRP6-like 3
ath-u.5	AT2G32415	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein
vvi-u.5	100261955	protein RRP6-like 3
sly-u.5	101254313	protein RRP6-like 3
osa-u.5	107275761	protein RRP6-like 3
zma-u.5	103633224	Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain

functional annotation

KEGG

GO BP

GO:0071040 [list] [network] nuclear polyadenylation-dependent antisense transcript catabolic process	(3 genes)	IEA
GO:0071044 [list] [network] histone mRNA catabolic process	(3 genes)	IEA
GO:0071036 [list] [network] nuclear polyadenylation-dependent snoRNA catabolic process	(4 genes)	IEA
GO:0071037 [list] [network] nuclear polyadenylation-dependent snRNA catabolic process	(4 genes)	IEA
GO:0071039 [list] [network] nuclear polyadenylation-dependent CUT catabolic process	(4 genes)	IEA
GO:0071051 [list] [network] poly(A)-dependent snoRNA 3'-end processing	(10 genes)	IEA
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	(11 genes)	IEA
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process	(12 genes)	IEA
GO:0071038 [list] [network] TRAMP-dependent tRNA surveillance pathway	(12 genes)	IEA

GO CC

GO:0000176 [list] [network] nuclear exosome (RNase complex)	(17 genes)	IEA
GO:0005730 [list] [network] nucleolus	(210 genes)	IEA

GO MF

GO:0003727 [list] [network] single-stranded RNA binding	(16 genes)	IEA
GO:0000175 [list] [network] 3'-5'-RNA exonuclease activity	(37 genes)	IEA
GO:0000166 [list] [network] nucleotide binding	(3764 genes)	IEA

Protein

XP_003605934.2 [sequence] [blastp]
XP_013455649.1 [sequence] [blastp]
XP_024638551.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, extr 3, nucl 1, cyto 1, mito 1, vacu 1, cyto_nucl 1	(predict for XP_003605934.2)
chlo 4, extr 3, nucl 1, cyto 1, mito 1, vacu 1, cyto_nucl 1	(predict for XP_013455649.1)
nucl 7, chlo 1, cyto 1, mito 1, plas 1, chlo_mito 1, mito_plas 1, cyto_plas 1	(predict for XP_024638551.1)

Subcellular
localization
TargetP

chlo 5	(predict for XP_003605934.2)
chlo 5	(predict for XP_013455649.1)
scret 9	(predict for XP_024638551.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11445200	mtr-r.5 for 11445200	mtr-m.5 for 11445200	gma-u.5 for 100791485	ppo-u.5 for 18103732	ath-u.5 for AT2G32415	vvi-u.5 for 100261955	sly-u.5 for 101254313	osa-u.5 for 107275761	zma-u.5 for 103633224

Ortholog ID: 9411

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

protein RRP6-like 3

Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein

protein RRP6-like 3

Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain

protein RRP6-like 3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	4
mtr03018	RNA degradation	2
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	4
vvi00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	3
nta03082	ATP-dependent chromatin remodeling	2
nta03083	Polycomb repressive complex	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	2
nta03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

11445200

100791485

18103732

817803

103865199

100261955

121228313

107898747

106427697

106453576

102608683

101254313

102587156

107759560

107809017

107275761

103633224

123052556

123044693

123425908

8080744

100837522

5721247

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 11445200 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11445200 (mtr-u.5 coexpression data)


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	3	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11445200 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11445200 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**