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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   118472932   CCR4-NOT transcription complex subunit 10 
 zma-r.6   118472932   CCR4-NOT transcription complex subunit 10 
 zma-u.5   100383212   Tetratricopeptide repeat (TPR)-like superfamily protein 
 osa-u.5   4346428   uncharacterized LOC4346428 
 ath-u.5   AT5G35430   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100812215   CCR4-NOT transcription complex subunit 10 
 gma-u.5   100802507   CCR4-NOT transcription complex subunit 10 
 sly-u.5   101266237   uncharacterized LOC101266237 
 vvi-u.5   100252496   uncharacterized LOC100252496 
 ppo-u.5   18107811   uncharacterized LOC18107811 
 ppo-u.5   18099924   uncharacterized LOC18099924 
 mtr-u.5   11444960   CCR4-NOT transcription complex subunit 10 

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Top 50 coexpressed genes to 118472932 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 118472932 (zma-u.5 coexpression data)

CoexMap"118472932"


zmaLOC118472932 | Entrez gene ID : 118472932    
Species zma osa ath gma sly vvi ppo mtr bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 1 1 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma03018 [list] [network] RNA degradation (140 genes)
GO BP
GO:0017148 [list] [network] negative regulation of translation  (32 genes)  IEA  
GO:0006402 [list] [network] mRNA catabolic process  (104 genes)  IEA  
GO CC
GO:0030014 [list] [network] CCR4-NOT complex  (45 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (4389 genes)  IEA  
Protein XP_035816836.1 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 3,  nucl 3,  E.R._plas 2,  chlo 1,  cysk_nucl 1  (predict for XP_035816836.1)
Subcellular
localization
TargetP
other 8  (predict for XP_035816836.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
118472932
zma-r.6
for
118472932
zma-u.5
for
100383212
osa-u.5
for
4346428
ath-u.5
for
AT5G35430
gma-u.5
for
100812215
gma-u.5
for
100802507
sly-u.5
for
101266237
vvi-u.5
for
100252496
ppo-u.5
for
18107811
ppo-u.5
for
18099924
mtr-u.5
for
11444960


Ortholog ID: 6092
Species zma zma sbi osa tae tae hvu bdi bdi ath gma gma sly bra bra vvi ppo ppo mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC118472932 LOC100383212 LOC8062597 LOC4346428 LOC123111498 LOC123103309 LOC123399448 LOC100826144 LOC100832993 AT5G35430 LOC100812215 LOC100802507 LOC101266237 LOC103849216 LOC103849237 LOC100252496 LOC18107811 LOC18099924 LOC11444960 LOC121225227 LOC107901326 LOC106393763 LOC106387380 LOC102586645 LOC102620348 LOC107827744 LOC107773111 CHLRE_08g376200v5
Function* CCR4-NOT transcription complex subunit 10 Tetratricopeptide repeat (TPR)-like superfamily protein CCR4-NOT transcription complex subunit 10 uncharacterized LOC4346428 CCR4-NOT transcription complex subunit 10 CCR4-NOT transcription complex subunit 10 CCR4-NOT transcription complex subunit 10 CCR4-NOT transcription complex subunit 10 CCR4-NOT transcription complex subunit 10 Tetratricopeptide repeat (TPR)-like superfamily protein CCR4-NOT transcription complex subunit 10 CCR4-NOT transcription complex subunit 10 uncharacterized LOC101266237 CCR4-NOT transcription complex subunit 10 CCR4-NOT transcription complex subunit 10 uncharacterized LOC100252496 uncharacterized LOC18107811 uncharacterized LOC18099924 CCR4-NOT transcription complex subunit 10 CCR4-NOT transcription complex subunit 10 CCR4-NOT transcription complex subunit 10 CCR4-NOT transcription complex subunit 10-like CCR4-NOT transcription complex subunit 10-like CCR4-NOT transcription complex subunit 10-A uncharacterized LOC102620348 uncharacterized LOC107827744 uncharacterized LOC107773111 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 4
sbi04120 Ubiquitin mediated proteolysis 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 4
tae04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 5
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
hvu03018 RNA degradation 2
hvu04120 Ubiquitin mediated proteolysis 2
hvu03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 2
bdi04382 Cornified envelope formation 2
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 5
ath03013 Nucleocytoplasmic transport 2
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 4
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03250 Viral life cycle - HIV-1 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 3
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 3
ppo03082 ATP-dependent chromatin remodeling 3
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
mtr04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi00510 N-Glycan biosynthesis 2
ghi00513 Various types of N-glycan biosynthesis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 4
sot03018 RNA degradation 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 118472932 100383212 8062597 4346428 123111498 123103309 123399448 100826144 100832993 833507 100812215 100802507 101266237 103849216 103849237 100252496 18107811 18099924 11444960 121225227 107901326 106393763 106387380 102586645 102620348 107827744 107773111 5719940
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