ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	SNF5	chromatin structure-remodeling complex protein BSH-like
mtr-u.5	11438224	chromatin structure-remodeling complex protein BSH
ppo-u.5	7496492	chromatin structure-remodeling complex protein BSH
ath-u.5	BSH	transcription regulatory protein SNF5, putative (BSH)
vvi-u.5	100249448	chromatin structure-remodeling complex protein BSH
sly-u.5	101255453	chromatin structure-remodeling complex protein BSH
osa-u.5	4330573	chromatin structure-remodeling complex protein BSH
zma-u.5	100191936	SWI/SNF, matrix-associated, actin-dependent regulator of chromatin subfamily B member 1

functional annotation

KEGG

GO BP

GO:0006338 [list] [network] chromatin remodeling

(245 genes)

IEA

GO CC

GO:0000228 [list] [network] nuclear chromosome

(178 genes)

IEA

GO MF

Protein

XP_040860894.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, cyto_nucl 4, cyto_E.R. 2, nucl 2, chlo 1, extr 1

(predict for XP_040860894.1)

Subcellular
localization
TargetP

scret 7, other 5

(predict for XP_040860894.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for SNF5	mtr-u.5 for 11438224	ppo-u.5 for 7496492	ath-u.5 for BSH	vvi-u.5 for 100249448	sly-u.5 for 101255453	osa-u.5 for 4330573	zma-u.5 for 100191936

Ortholog ID: 7574

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SNF5

BSH

Function^*

chromatin structure-remodeling complex protein BSH-like

chromatin structure-remodeling complex protein BSH

transcription regulatory protein SNF5, putative (BSH)

chromatin structure-remodeling complex protein BSH

chromatin structure-remodeling complex protein BSH-like

chromatin structure-remodeling complex protein BSH

SWI/SNF, matrix-associated, actin-dependent regulator of chromatin subfamily B member 1

chromatin structure-remodeling complex protein BSH

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	7
gma03040	Spliceosome	3
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03250	Viral life cycle - HIV-1	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03250	Viral life cycle - HIV-1	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	4
bna03082	ATP-dependent chromatin remodeling	3
bna03250	Viral life cycle - HIV-1	3
bna00270	Cysteine and methionine metabolism	2
bna04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	4
bna03082	ATP-dependent chromatin remodeling	3
bna03250	Viral life cycle - HIV-1	3
bna00270	Cysteine and methionine metabolism	2
bna04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00970	Aminoacyl-tRNA biosynthesis	4
cit03060	Protein export	2
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	3
sly03420	Nucleotide excision repair	3
sly03440	Homologous recombination	2
sly03040	Spliceosome	2
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2
sot03082	ATP-dependent chromatin remodeling	2
sot03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2
sot03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	4
nta03250	Viral life cycle - HIV-1	2
nta04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	4
nta03250	Viral life cycle - HIV-1	2
nta04136	Autophagy - other	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	2
sbi03030	DNA replication	2
sbi03082	ATP-dependent chromatin remodeling	2
sbi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	4

Expression

Expression pattern

Entrez Gene ID^*

100818624

11438224

7496492

821025

103869676

100249448

107886895

107907386

125609009

106345287

102630390

101255453

102582388

102584822

107765782

107766183

4330573

100191936

123190533

123110967

123423952

8068206

100837874

5715878

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to SNF5 (gma-u.5 coexpression data)

Top 50 enrichment test to SNF5 (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	vvi	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to SNF5 (gma-u.5 coexpression data)

Top 50 enrichment test to SNF5 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**