ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	121203172	uncharacterized LOC121203172
ghi-r.1	107900197	uncharacterized LOC107900197
ghi-r.1	107914605	uncharacterized LOC107914605
ghi-r.1	107931621	uncharacterized LOC107931621
ath-u.5	AT3G59670	elongation factor
bra-r.6	103830224	uncharacterized LOC103830224
bra-r.6	103841816	uncharacterized LOC103841816
bna-r.1	106368437	uncharacterized LOC106368437
bna-r.1	111208879	uncharacterized LOC111208879
bna-r.1	106356808	uncharacterized LOC106356808
cit-r.1	102622342	uncharacterized LOC102622342
cit-r.1	102628256	uncharacterized LOC102628256
cit-r.1	102619044	uncharacterized LOC102619044
gma-u.5	100813737	uncharacterized LOC100813737
gma-u.5	100810113	uncharacterized LOC100810113
gma-u.5	100796351	uncharacterized LOC100796351
vvi-u.5	100255929	uncharacterized LOC100255929
vvi-u.5	100258156	uncharacterized LOC100258156
ppo-u.5	112327635	uncharacterized LOC112327635
ppo-u.5	18104591	uncharacterized LOC18104591
ppo-u.5	18101151	uncharacterized LOC18101151
mtr-u.5	25500034	uncharacterized LOC25500034
mtr-u.5	25497451	uncharacterized LOC25497451
sly-u.5	101259086	uncharacterized LOC101259086
sly-u.5	101264799	uncharacterized LOC101264799
sot-r.1	102599695	uncharacterized LOC102599695
sot-r.1	102584407	uncharacterized LOC102584407
nta-r.1	107831848	uncharacterized LOC107831848
nta-r.1	107822703	uncharacterized LOC107822703
nta-r.1	107823111	uncharacterized LOC107823111
osa-u.5	4338559	uncharacterized LOC4338559
zma-u.5	100193881	uncharacterized LOC100193881
tae-r.2	123053125	uncharacterized LOC123053125
tae-r.2	123129737	uncharacterized LOC123129737
tae-r.2	123181784	uncharacterized LOC123181784
hvu-r.1	123440502	uncharacterized LOC123440502
sbi-r.1	8062701	uncharacterized LOC8062701
bdi-r.1	100831845	uncharacterized LOC100831845

Top 50 coexpressed genes to 121203172 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 121203172 (ghi-r.1 coexpression data)

CoexMap"121203172"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_040959913.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto_nucl 5

(predict for XP_040959913.1)

Subcellular
localization
TargetP

other 8

(predict for XP_040959913.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 121203172	ghi-r.1 for 107900197	ghi-r.1 for 107914605	ghi-r.1 for 107931621	ath-u.5 for AT3G59670	bra-r.6 for 103830224	bra-r.6 for 103841816	bna-r.1 for 106368437	bna-r.1 for 111208879	bna-r.1 for 106356808	cit-r.1 for 102622342	cit-r.1 for 102628256	cit-r.1 for 102619044	gma-u.5 for 100813737	gma-u.5 for 100810113	gma-u.5 for 100796351	vvi-u.5 for 100255929	vvi-u.5 for 100258156	ppo-u.5 for 112327635	ppo-u.5 for 18104591	ppo-u.5 for 18101151	mtr-u.5 for 25500034	mtr-u.5 for 25497451	sly-u.5 for 101259086	sly-u.5 for 101264799	sot-r.1 for 102599695	sot-r.1 for 102584407	nta-r.1 for 107831848	nta-r.1 for 107822703	nta-r.1 for 107823111	osa-u.5 for 4338559	zma-u.5 for 100193881	tae-r.2 for 123053125	tae-r.2 for 123129737	tae-r.2 for 123181784	hvu-r.1 for 123440502	sbi-r.1 for 8062701	bdi-r.1 for 100831845

Ortholog

Ortholog ID: 3820

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC107900197

uncharacterized LOC107914605

uncharacterized LOC107938689

elongation factor

uncharacterized LOC103830224

uncharacterized LOC103841816

uncharacterized LOC111208879

uncharacterized LOC106356808

uncharacterized LOC106403104

uncharacterized LOC102622342

uncharacterized LOC102628256

uncharacterized LOC102619044

uncharacterized LOC100813737

uncharacterized LOC100810113

uncharacterized LOC100255929

uncharacterized LOC100258156

uncharacterized LOC112327635

uncharacterized LOC18104591

uncharacterized LOC18101151

uncharacterized LOC25500034

uncharacterized LOC25497451

uncharacterized LOC11443456

uncharacterized LOC101259086

uncharacterized LOC101264799

uncharacterized LOC102599695

uncharacterized LOC102584407

uncharacterized LOC107831848

uncharacterized LOC107822703

uncharacterized LOC107823111

uncharacterized LOC4338559

uncharacterized LOC100193881

uncharacterized LOC123053125

uncharacterized LOC123129737

uncharacterized LOC123181784

uncharacterized LOC123440502

uncharacterized LOC8062701

uncharacterized LOC100831845

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00780	Biotin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	3
ath03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00010	Glycolysis / Gluconeogenesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00902	Monoterpenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	7
gma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2
ppo03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	7
ppo03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04136	Autophagy - other	3
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	4
mtr03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2
hvu03030	DNA replication	2
hvu03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	2

Expression

Expression pattern

Entrez Gene ID^*

107900197

107914605

107938689

825136

103830224

103841816

111208879

106356808

106403104

102622342

102628256

102619044

100813737

100810113

100255929

100258156

112327635

18104591

18101151

25500034

25497451

11443456

101259086

101264799

102599695

102584407

107831848

107822703

107823111

4338559

100193881

123053125

123129737

123181784

123440502

8062701

100831845

The preparation time of this page was 0.2 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	1	2	3	3	3	2	3	2	2	2	3	1	1	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 121203172 (ghi-r.1 coexpression data)

Top 50 enrichment test to 121203172 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**