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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121203438   protein TIC236, chloroplastic-like 
 ghi-r.1   107907308   protein TIC236, chloroplastic 
 ghi-r.1   121218263   protein TIC236, chloroplastic 
 ghi-r.1   107901377   protein TIC236, chloroplastic 
 ath-u.5   emb2410   embryo defective 2410 
 bra-r.6   103864684   protein TIC236, chloroplastic 
 bna-r.1   106391138   protein TIC236, chloroplastic 
 bna-r.1   106446814   protein TIC236, chloroplastic 
 cit-r.1   102627941   hypothetical protein 
 gma-u.5   100788741   protein TIC236, chloroplastic 
 gma-u.5   100779257   protein TIC236, chloroplastic-like 
 gma-u.5   100796955   protein TIC236, chloroplastic 
 vvi-u.5   100247424   protein TIC236, chloroplastic 
 ppo-u.5   7458992   protein TIC236, chloroplastic 
 mtr-u.5   25481915   protein TIC236, chloroplastic 
 mtr-u.5   11429977   protein TIC236, chloroplastic 
 sly-u.5   101257991   protein TIC236, chloroplastic 
 sot-r.1   102582430   uncharacterized LOC102582430 
 nta-r.1   107801477   protein TIC236, chloroplastic 
 nta-r.1   107777328   protein TIC236, chloroplastic-like 
 nta-r.1   107772434   protein TIC236, chloroplastic-like 
 osa-u.5   4323878   Protein SUBSTANDARD STARCH GRAIN 4, chloroplastic 
 zma-u.5   103648841   protein SUBSTANDARD STARCH GRAIN 4, chloroplastic 
 zma-u.5   103649669   protein SUBSTANDARD STARCH GRAIN 4, chloroplastic 
 tae-r.2   123077531   protein SUBSTANDARD STARCH GRAIN 4, chloroplastic 
 tae-r.2   123069001   protein SUBSTANDARD STARCH GRAIN 4, chloroplastic 
 tae-r.2   123060460   protein SUBSTANDARD STARCH GRAIN 4, chloroplastic 
 hvu-r.1   123442983   protein SUBSTANDARD STARCH GRAIN 4, chloroplastic 
 sbi-r.1   8056518   uncharacterized LOC8056518 
 bdi-r.1   100830324   uncharacterized LOC100830324 
 cre-r.1   CHLRE_05g243150v5   uncharacterized protein 

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Top 50 coexpressed genes to 121203438 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121203438 (ghi-r.1 coexpression data)

CoexMap"121203438"


ghiLOC121203438 | Entrez gene ID : 121203438    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 1 2 1 3 1 1 2 1 1 3 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009306 [list] [network] protein secretion  (37 genes)  IEA  
GO CC
GO:0005886 [list] [network] plasma membrane  (2553 genes)  IEA  
GO MF
Protein XP_040948949.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 2  (predict for XP_040948949.1)
Subcellular
localization
TargetP
other 4,  chlo 4  (predict for XP_040948949.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121203438
ghi-r.1
for
107907308
ghi-r.1
for
121218263
ghi-r.1
for
107901377
ath-u.5
for
emb2410
bra-r.6
for
103864684
bna-r.1
for
106391138
bna-r.1
for
106446814
cit-r.1
for
102627941
gma-u.5
for
100788741
gma-u.5
for
100779257
gma-u.5
for
100796955
vvi-u.5
for
100247424
ppo-u.5
for
7458992
mtr-u.5
for
25481915
mtr-u.5
for
11429977
sly-u.5
for
101257991
sot-r.1
for
102582430
nta-r.1
for
107801477
nta-r.1
for
107777328
nta-r.1
for
107772434
osa-u.5
for
4323878
zma-u.5
for
103648841
zma-u.5
for
103649669
tae-r.2
for
123077531
tae-r.2
for
123069001
tae-r.2
for
123060460
hvu-r.1
for
123442983
sbi-r.1
for
8056518
bdi-r.1
for
100830324
cre-r.1
for
CHLRE_05g243150v5


Ortholog ID: 6227
Species ghi ghi ghi ath bra bna bna cit gma gma gma vvi ppo mtr mtr sly sot nta nta nta osa zma zma zma tae tae tae hvu sbi bdi cre
Symbol LOC107907308 LOC121218263 LOC107901377 emb2410 LOC103864684 LOC106391138 LOC106446814 LOC102627941 LOC100788741 LOC100796955 LOC100793039 LOC100247424 LOC7458992 LOC25481915 LOC11429977 LOC101257991 LOC102582430 LOC107801477 LOC107777328 LOC107772434 LOC4323878 LOC103648841 LOC103649669 LOC103632223 LOC123077531 LOC123069001 LOC123060460 LOC123442983 LOC8056518 LOC100830324 CHLRE_05g243150v5
Function* protein TIC236, chloroplastic protein TIC236, chloroplastic protein TIC236, chloroplastic embryo defective 2410 protein TIC236, chloroplastic protein TIC236, chloroplastic protein TIC236, chloroplastic hypothetical protein protein TIC236, chloroplastic protein TIC236, chloroplastic protein TIC236, chloroplastic protein TIC236, chloroplastic protein TIC236, chloroplastic protein TIC236, chloroplastic protein TIC236, chloroplastic protein TIC236, chloroplastic uncharacterized LOC102582430 protein TIC236, chloroplastic protein TIC236, chloroplastic-like protein TIC236, chloroplastic-like Protein SUBSTANDARD STARCH GRAIN 4, chloroplastic protein SUBSTANDARD STARCH GRAIN 4, chloroplastic protein SUBSTANDARD STARCH GRAIN 4, chloroplastic protein SUBSTANDARD STARCH GRAIN 4, chloroplastic protein SUBSTANDARD STARCH GRAIN 4, chloroplastic protein SUBSTANDARD STARCH GRAIN 4, chloroplastic protein SUBSTANDARD STARCH GRAIN 4, chloroplastic protein SUBSTANDARD STARCH GRAIN 4, chloroplastic uncharacterized LOC8056518 uncharacterized LOC100830324 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi04814 Motor proteins 2
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 3
ghi03440 Homologous recombination 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 2
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 3
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma02010 ABC transporters 2
gma04146 Peroxisome 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 4
sot00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
nta02010 ABC transporters 2
nta04146 Peroxisome 2
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
nta04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
nta02010 ABC transporters 2
nta04146 Peroxisome 2
nta03460 Fanconi anemia pathway 2
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
zma03018 RNA degradation 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00310 Lysine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00310 Lysine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 4
tae00562 Inositol phosphate metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae00310 Lysine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 3
bdi03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107907308 121218263 107901377 817107 103864684 106391138 106446814 102627941 100788741 100796955 100793039 100247424 7458992 25481915 11429977 101257991 102582430 107801477 107777328 107772434 4323878 103648841 103649669 103632223 123077531 123069001 123060460 123442983 8056518 100830324 5726284
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