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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121211306   3-dehydroquinate synthase, chloroplastic 
 ath-u.5   AT5G66120   3-dehydroquinate synthase 
 gma-u.5   100812989   3-dehydroquinate synthase-like 
 gma-u.5   100806628   3-dehydroquinate synthase 
 vvi-u.5   100266137   3-dehydroquinate synthase-like 
 ppo-u.5   18099163   3-dehydroquinate synthase, chloroplastic 
 mtr-u.5   11420575   3-dehydroquinate synthase, chloroplastic 
 sly-u.5   DHQS   dehydroquinate synthase 
 osa-u.5   4347717   3-dehydroquinate synthase, chloroplastic 
 zma-u.5   100283288   3-dehydroquinate synthase 
 zma-u.5   100272979   3-dehydroquinate synthase 

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Top 50 coexpressed genes to 121211306 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121211306 (ghi-r.1 coexpression data)

CoexMap"121211306"


ghiLOC121211306 | Entrez gene ID : 121211306    
Species ghi ath gma vvi ppo mtr sly osa zma hvu bna cit bra sbi bdi nta tae cre sot
Paralog 1 1 2 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (103 genes)
ghi01230 [list] [network] Biosynthesis of amino acids (568 genes)
GO BP
GO:0009073 [list] [network] aromatic amino acid family biosynthetic process  (98 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0003856 [list] [network] 3-dehydroquinate synthase activity  (9 genes)  IEA  
Protein XP_040939918.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_040939918.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_040939918.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121211306
ath-u.5
for
AT5G66120
gma-u.5
for
100812989
gma-u.5
for
100806628
vvi-u.5
for
100266137
ppo-u.5
for
18099163
mtr-u.5
for
11420575
sly-u.5
for
DHQS
osa-u.5
for
4347717
zma-u.5
for
100283288
zma-u.5
for
100272979


Ortholog ID: 9196
Species ghi ghi ath bra bna bna cit gma gma vvi ppo mtr sly sot nta nta osa zma zma tae tae hvu sbi bdi bdi cre
Symbol LOC107945797 LOC121211306 AT5G66120 LOC103837671 LOC106366334 LOC106392246 LOC102631297 LOC100812989 LOC100806628 LOC100266137 LOC18099163 LOC11420575 DHQS LOC102598775 LOC107768348 LOC107787846 LOC4347717 LOC100272979 LOC100283288 LOC123104614 LOC123112886 LOC123400170 LOC8063321 LOC100834447 LOC100834750 CHLRE_08g368950v5
Function* 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase-like 3-dehydroquinate synthase 3-dehydroquinate synthase-like 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic dehydroquinate synthase 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase 3-dehydroquinate synthase 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ghi01230 Biosynthesis of amino acids 8
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ghi01230 Biosynthesis of amino acids 8
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 9
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ath00030 Pentose phosphate pathway 4
ath01200 Carbon metabolism 3
ath00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 14
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 11
bra00999 Biosynthesis of various plant secondary metabolites 3
bra00350 Tyrosine metabolism 2
bra00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 11
bna01230 Biosynthesis of amino acids 11
bna00010 Glycolysis / Gluconeogenesis 2
bna00071 Fatty acid degradation 2
bna00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 11
bna01230 Biosynthesis of amino acids 11
bna00010 Glycolysis / Gluconeogenesis 2
bna00071 Fatty acid degradation 2
bna00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 3
cit00510 N-Glycan biosynthesis 2
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
gma01230 Biosynthesis of amino acids 9
gma00020 Citrate cycle (TCA cycle) 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
gma01230 Biosynthesis of amino acids 8
gma01200 Carbon metabolism 3
gma00010 Glycolysis / Gluconeogenesis 2
gma00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
vvi01230 Biosynthesis of amino acids 7
vvi00020 Citrate cycle (TCA cycle) 3
vvi00350 Tyrosine metabolism 2
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 6
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
ppo01200 Carbon metabolism 2
ppo00071 Fatty acid degradation 2
ppo00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 8
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
mtr00350 Tyrosine metabolism 4
mtr01200 Carbon metabolism 4
mtr00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 10
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
sly01200 Carbon metabolism 5
sly00030 Pentose phosphate pathway 2
sly00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 9
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
sot01200 Carbon metabolism 4
sot00020 Citrate cycle (TCA cycle) 2
sot00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 6
nta00941 Flavonoid biosynthesis 6
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 6
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
nta01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 6
nta00941 Flavonoid biosynthesis 6
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 6
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
nta01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 9
osa01200 Carbon metabolism 6
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
osa00710 Carbon fixation by Calvin cycle 4
osa00620 Pyruvate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 11
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
zma01200 Carbon metabolism 5
zma00350 Tyrosine metabolism 4
zma00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 10
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
zma01200 Carbon metabolism 5
zma00350 Tyrosine metabolism 3
zma00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 12
tae01230 Biosynthesis of amino acids 12
tae00270 Cysteine and methionine metabolism 2
tae00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 13
tae01230 Biosynthesis of amino acids 13
tae00999 Biosynthesis of various plant secondary metabolites 3
tae00790 Folate biosynthesis 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
hvu01230 Biosynthesis of amino acids 4
hvu00480 Glutathione metabolism 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00940 Phenylpropanoid biosynthesis 9
sbi00360 Phenylalanine metabolism 8
sbi01230 Biosynthesis of amino acids 8
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
sbi00670 One carbon pool by folate 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 12
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
bdi01200 Carbon metabolism 5
bdi00030 Pentose phosphate pathway 4
bdi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 11
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
bdi01200 Carbon metabolism 5
bdi00030 Pentose phosphate pathway 4
bdi00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 7
cre03272 Virion - Hepatitis viruses 5
cre03250 Viral life cycle - HIV-1 4
cre04130 SNARE interactions in vesicular transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107945797 121211306 836744 103837671 106366334 106392246 102631297 100812989 100806628 100266137 18099163 11420575 544273 102598775 107768348 107787846 4347717 100272979 100283288 123104614 123112886 123400170 8063321 100834447 100834750 5721715
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