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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121218211   protein ALTERED SEED GERMINATION 2 
 ghi-r.1   121230324   protein ALTERED SEED GERMINATION 2 
 ghi-r.1   107957804   protein ALTERED SEED GERMINATION 2 
 ghi-r.1   107905062   protein ALTERED SEED GERMINATION 2 
 ath-u.5   ASG2   transducin family protein / WD-40 repeat family protein 
 bra-r.6   103846766   WD and tetratricopeptide repeats protein 1 
 bna-r.1   106415324   protein ALTERED SEED GERMINATION 2 
 bna-r.1   106372441   protein ALTERED SEED GERMINATION 2-like 
 cit-r.1   102631340   protein ALTERED SEED GERMINATION 2 
 gma-u.5   100820036   protein ALTERED SEED GERMINATION 2 
 gma-u.5   100793917   protein ALTERED SEED GERMINATION 2 
 vvi-u.5   100255806   protein ALTERED SEED GERMINATION 2 
 ppo-u.5   7486561   protein ALTERED SEED GERMINATION 2 
 ppo-u.5   7461809   protein ALTERED SEED GERMINATION 2 
 mtr-u.5   11420884   protein ALTERED SEED GERMINATION 2 
 sly-u.5   101248191   protein ALTERED SEED GERMINATION 2 
 sot-r.1   102588392   WD and tetratricopeptide repeats protein 1 
 nta-r.1   107827989   protein ALTERED SEED GERMINATION 2 
 nta-r.1   107804409   protein ALTERED SEED GERMINATION 2-like 
 osa-u.5   4331878   protein ALTERED SEED GERMINATION 2 
 zma-u.5   103640420   uncharacterized LOC103640420 
 zma-u.5   103631824   DDB1- and CUL4-associated factor 8 
 tae-r.2   123088677   uncharacterized LOC123088677 
 tae-r.2   123093436   protein ALTERED SEED GERMINATION 2 
 tae-r.2   123098713   protein ALTERED SEED GERMINATION 2 
 hvu-r.1   123449658   protein ALTERED SEED GERMINATION 2 
 sbi-r.1   8057643   uncharacterized LOC8057643 
 bdi-r.1   100824841   uncharacterized LOC100824841 
 cre-r.1   CHLRE_12g495650v5   uncharacterized protein 
 cre-r.1   CHLRE_10g425050v5   uncharacterized protein 

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Top 50 coexpressed genes to 121218211 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121218211 (ghi-r.1 coexpression data)

CoexMap"121218211"


ghiLOC121218211 | Entrez gene ID : 121218211    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 1 2 1 2 1 2 1 1 1 2 1 2 3 1 1 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045717 [list] [network] negative regulation of fatty acid biosynthetic process  (13 genes)  IEA  
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (59 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_040951009.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1,  vacu 1  (predict for XP_040951009.1)
Subcellular
localization
TargetP
other 9  (predict for XP_040951009.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121218211
ghi-r.1
for
121230324
ghi-r.1
for
107957804
ghi-r.1
for
107905062
ath-u.5
for
ASG2
bra-r.6
for
103846766
bna-r.1
for
106415324
bna-r.1
for
106372441
cit-r.1
for
102631340
gma-u.5
for
100820036
gma-u.5
for
100793917
vvi-u.5
for
100255806
ppo-u.5
for
7486561
ppo-u.5
for
7461809
mtr-u.5
for
11420884
sly-u.5
for
101248191
sot-r.1
for
102588392
nta-r.1
for
107827989
nta-r.1
for
107804409
osa-u.5
for
4331878
zma-u.5
for
103640420
zma-u.5
for
103631824
tae-r.2
for
123088677
tae-r.2
for
123093436
tae-r.2
for
123098713
hvu-r.1
for
123449658
sbi-r.1
for
8057643
bdi-r.1
for
100824841
cre-r.1
for
CHLRE_12g495650v5
cre-r.1
for
CHLRE_10g425050v5


Ortholog ID: 7709
Species ghi ghi ghi ath bra bna bna cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi cre cre
Symbol LOC121218211 LOC107957804 LOC107905062 ASG2 LOC103846766 LOC106415324 LOC106372441 LOC102631340 LOC100820036 LOC100793917 LOC100255806 LOC7486561 LOC7461809 LOC11420884 LOC101248191 LOC102588392 LOC107827989 LOC107804409 LOC4331878 LOC103640420 LOC103631824 LOC123088677 LOC123093436 LOC123098713 LOC123449658 LOC8057643 LOC100824841 CHLRE_12g495650v5 CHLRE_10g425050v5
Function* protein ALTERED SEED GERMINATION 2 protein ALTERED SEED GERMINATION 2 protein ALTERED SEED GERMINATION 2 transducin family protein / WD-40 repeat family protein WD and tetratricopeptide repeats protein 1 protein ALTERED SEED GERMINATION 2 protein ALTERED SEED GERMINATION 2-like protein ALTERED SEED GERMINATION 2 protein ALTERED SEED GERMINATION 2 protein ALTERED SEED GERMINATION 2 protein ALTERED SEED GERMINATION 2 protein ALTERED SEED GERMINATION 2 protein ALTERED SEED GERMINATION 2 protein ALTERED SEED GERMINATION 2 protein ALTERED SEED GERMINATION 2 WD and tetratricopeptide repeats protein 1 protein ALTERED SEED GERMINATION 2 protein ALTERED SEED GERMINATION 2-like protein ALTERED SEED GERMINATION 2 uncharacterized LOC103640420 DDB1- and CUL4-associated factor 8 uncharacterized LOC123088677 protein ALTERED SEED GERMINATION 2 protein ALTERED SEED GERMINATION 2 protein ALTERED SEED GERMINATION 2 uncharacterized LOC8057643 uncharacterized LOC100824841 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00564 Glycerophospholipid metabolism 2
ghi00565 Ether lipid metabolism 2
ghi04144 Endocytosis 2
ghi00514 Other types of O-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00600 Sphingolipid metabolism 2
bra00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
mtr04136 Autophagy - other 2
mtr03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 3
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 2
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03083 Polycomb repressive complex 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00310 Lysine degradation 2
tae03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00561 Glycerolipid metabolism 3
tae00564 Glycerophospholipid metabolism 3
tae04070 Phosphatidylinositol signaling system 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03083 Polycomb repressive complex 3
tae00561 Glycerolipid metabolism 3
tae00564 Glycerophospholipid metabolism 3
tae04070 Phosphatidylinositol signaling system 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04136 Autophagy - other 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
cre03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121218211 107957804 107905062 830961 103846766 106415324 106372441 102631340 100820036 100793917 100255806 7486561 7461809 11420884 101248191 102588392 107827989 107804409 4331878 103640420 103631824 123088677 123093436 123098713 123449658 8057643 100824841 5726075 5728199
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