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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121220341   pentatricopeptide repeat-containing protein At4g21300 
 ghi-r.1   107947784   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 vvi-u.5   104881105   pentatricopeptide repeat-containing protein At4g39530 
 osa-u.5   107280019   pentatricopeptide repeat-containing protein At1g11290, chloroplastic-like 
 tae-r.2   123128005   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 
 sbi-r.1   8076035   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 bdi-r.1   100825222   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 

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Top 50 coexpressed genes to 121220341 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121220341 (ghi-r.1 coexpression data)

CoexMap"121220341"


ghiLOC121220341 | Entrez gene ID : 121220341    
Species ghi vvi osa tae sbi bdi hvu sot sly nta bna ppo zma cre mtr ath gma bra cit
Paralog 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (557 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (14879 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_040955964.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  cyto 3,  cyto_nucl 3,  mito 1,  cyto_E.R. 1  (predict for XP_040955964.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for XP_040955964.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121220341
ghi-r.1
for
107947784
vvi-u.5
for
104881105
osa-u.5
for
107280019
tae-r.2
for
123128005
sbi-r.1
for
8076035
bdi-r.1
for
100825222


Ortholog ID: 16976
Species ghi ghi vvi osa tae sbi bdi
Symbol LOC121220341 LOC107947784 LOC104881105 LOC107280019 LOC123128005 LOC8076035 LOC100825222
Function* pentatricopeptide repeat-containing protein At4g21300 pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein At4g39530 pentatricopeptide repeat-containing protein At1g11290, chloroplastic-like pentatricopeptide repeat-containing protein At1g05750, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic
Coexmap

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Coexpression

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KEGG Info
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121220341 107947784 104881105 107280019 123128005 8076035 100825222
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