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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121228203   glycine--tRNA ligase, mitochondrial 1 
 ath-u.5   AT1G29880   glycyl-tRNA synthetase / glycine-tRNA ligase 
 gma-u.5   100810476   glycine--tRNA ligase, mitochondrial 1 
 vvi-u.5   100257704   glycine--tRNA ligase, mitochondrial 1 
 vvi-u.5   100262502   glycine--tRNA ligase, mitochondrial 1 
 ppo-u.5   7496527   glycine--tRNA ligase, mitochondrial 1 
 ppo-u.5   7491435   glycine--tRNA ligase, mitochondrial 1 
 mtr-u.5   25499807   glycine--tRNA ligase, mitochondrial 1 
 mtr-u.5   25488482   glycine--tRNA ligase, mitochondrial 1 
 mtr-u.5   25488481   glycine--tRNA ligase, mitochondrial 1 
 sly-u.5   101257430   glycine--tRNA ligase, mitochondrial 1-like 
 sly-u.5   101268375   glycine--tRNA ligase, mitochondrial 1 
 osa-u.5   4335708   glycine--tRNA ligase, mitochondrial 1 
 osa-u.5   4346171   glycine--tRNA ligase, mitochondrial 1 
 zma-u.5   100383520   Glycine--tRNA ligase mitochondrial 1 
 zma-u.5   103643028   glycine--tRNA ligase, mitochondrial 1 
 zma-u.5   113687172   glycine--tRNA ligase, mitochondrial 

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Top 50 coexpressed genes to 121228203 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121228203 (ghi-r.1 coexpression data)

CoexMap"121228203"


ghiLOC121228203 | Entrez gene ID : 121228203    
Species ghi ath gma vvi ppo mtr sly osa zma cre cit hvu bdi sot bra sbi tae nta bna
Paralog 1 1 1 2 2 3 2 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00970 [list] [network] Aminoacyl-tRNA biosynthesis (172 genes)
GO BP
GO:0070150 [list] [network] mitochondrial glycyl-tRNA aminoacylation  (2 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (1525 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0004820 [list] [network] glycine-tRNA ligase activity  (8 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5155 genes)  IEA  
Protein XP_040967415.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  chlo_mito 4,  mito 4,  cyto_mito 2  (predict for XP_040967415.1)
Subcellular
localization
TargetP
chlo 6,  mito 5  (predict for XP_040967415.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121228203

.
ath-u.5
for
AT1G29880

.
gma-u.5
for
100810476

.
vvi-u.5
for
100257704

.
vvi-u.5
for
100262502

.
ppo-u.5
for
7496527

.
ppo-u.5
for
7491435

.
mtr-u.5
for
25499807

.
mtr-u.5
for
25488482

.
mtr-u.5
for
25488481

.
sly-u.5
for
101257430

.
sly-u.5
for
101268375

.
osa-u.5
for
4335708

.
osa-u.5
for
4346171

.
zma-u.5
for
100383520

.
zma-u.5
for
103643028

.
zma-u.5
for
113687172

.


Ortholog ID: 4468
Species ath gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi nta nta
Symbol AT1G29880 LOC100810476 LOC101268375 LOC101257430 LOC4346171 LOC4335708 LOC100383520 LOC113687172 LOC103828921 LOC103840454 LOC100262502 LOC100257704 LOC7496527 LOC7491435 LOC25488481 LOC25488482 LOC123170395 LOC123189099 LOC123426589 LOC123413574 LOC107898984 LOC121228203 LOC111206420 LOC106421819 CHLRE_05g233800v5 LOC8072037 LOC8060590 LOC102606369 LOC102591638 LOC102621048 LOC100824721 LOC107777878 LOC107822727
Function* glycyl-tRNA synthetase / glycine-tRNA ligase glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1-like glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 Glycine--tRNA ligase mitochondrial 1 glycine--tRNA ligase, mitochondrial glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1-like glycine--tRNA ligase, mitochondrial 1-like glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1-like glycine--tRNA ligase, mitochondrial 1-like uncharacterized protein glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1-like glycine--tRNA ligase, mitochondrial 1-like glycine--tRNA ligase, mitochondrial 1-like glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 8
ath00970 Aminoacyl-tRNA biosynthesis 7
ath00300 Lysine biosynthesis 5
ath00470 D-Amino acid metabolism 3
ath01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 4
gma00250 Alanine, aspartate and glutamate metabolism 3
gma00230 Purine metabolism 2
gma01232 Nucleotide metabolism 2
gma00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 5
sly03010 Ribosome 4
sly01230 Biosynthesis of amino acids 3
sly00261 Monobactam biosynthesis 2
sly00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 6
osa03008 Ribosome biogenesis in eukaryotes 3
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 4
osa01230 Biosynthesis of amino acids 3
osa01040 Biosynthesis of unsaturated fatty acids 2
osa01212 Fatty acid metabolism 2
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 7
zma00970 Aminoacyl-tRNA biosynthesis 2
zma03008 Ribosome biogenesis in eukaryotes 2
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 6
bra01240 Biosynthesis of cofactors 3
bra00230 Purine metabolism 2
bra04626 Plant-pathogen interaction 2
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 4
bra01240 Biosynthesis of cofactors 2
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 3
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 6
ppo03008 Ribosome biogenesis in eukaryotes 4
ppo01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 7
ppo01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 5
mtr00230 Purine metabolism 2
mtr00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 5
mtr00230 Purine metabolism 2
mtr00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae00030 Pentose phosphate pathway 3
tae00480 Glutathione metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00230 Purine metabolism 2
hvu01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 7
ghi00300 Lysine biosynthesis 5
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi00261 Monobactam biosynthesis 3
ghi00470 D-Amino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 7
ghi00970 Aminoacyl-tRNA biosynthesis 6
ghi00300 Lysine biosynthesis 5
ghi00470 D-Amino acid metabolism 3
ghi00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 8
cre00260 Glycine, serine and threonine metabolism 3
cre00270 Cysteine and methionine metabolism 3
cre01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 3
sot03008 Ribosome biogenesis in eukaryotes 2
sot00190 Oxidative phosphorylation 2
sot04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
sot00970 Aminoacyl-tRNA biosynthesis 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
cit03040 Spliceosome 2
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 9
bdi03013 Nucleocytoplasmic transport 2
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta00260 Glycine, serine and threonine metabolism 2
nta00261 Monobactam biosynthesis 2
nta00270 Cysteine and methionine metabolism 2
nta00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
nta00970 Aminoacyl-tRNA biosynthesis 2
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839866 100810476 101268375 101257430 4346171 4335708 100383520 113687172 103828921 103840454 100262502 100257704 7496527 7491435 25488481 25488482 123170395 123189099 123426589 123413574 107898984 121228203 111206420 106421819 5727750 8072037 8060590 102606369 102591638 102621048 100824721 107777878 107822727
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