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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121228873   protein ROOT PRIMORDIUM DEFECTIVE 1 
 ghi-r.1   107922417   protein ROOT PRIMORDIUM DEFECTIVE 1 
 ath-u.5   AT5G45790   Ubiquitin carboxyl-terminal hydrolase family protein 
 bra-r.6   103827772   protein ROOT PRIMORDIUM DEFECTIVE 1 
 bna-r.1   111208735   protein ROOT PRIMORDIUM DEFECTIVE 1-like 
 bna-r.1   111198773   protein ROOT PRIMORDIUM DEFECTIVE 1-like 
 cit-r.1   102617783   protein ROOT PRIMORDIUM DEFECTIVE 1 
 gma-u.5   100789857   protein ROOT PRIMORDIUM DEFECTIVE 1 
 vvi-u.5   100243149   protein ROOT PRIMORDIUM DEFECTIVE 1 
 mtr-u.5   25499000   protein ROOT PRIMORDIUM DEFECTIVE 1 
 sly-u.5   101248441   protein ROOT PRIMORDIUM DEFECTIVE 1 
 sot-r.1   102602355   protein ROOT PRIMORDIUM DEFECTIVE 1 
 nta-r.1   107799291   protein ROOT PRIMORDIUM DEFECTIVE 1 
 nta-r.1   107777977   protein ROOT PRIMORDIUM DEFECTIVE 1-like 
 osa-u.5   9267918   protein ROOT PRIMORDIUM DEFECTIVE 1 
 zma-u.5   100502365   uncharacterized LOC100502365 
 zma-u.5   103640669   protein ROOT PRIMORDIUM DEFECTIVE 1-like 
 hvu-r.1   123448190   protein ROOT PRIMORDIUM DEFECTIVE 1 
 sbi-r.1   8071429   protein ROOT PRIMORDIUM DEFECTIVE 1 
 bdi-r.1   100836990   protein ROOT PRIMORDIUM DEFECTIVE 1 

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Top 50 coexpressed genes to 121228873 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121228873 (ghi-r.1 coexpression data)

CoexMap"121228873"


ghiLOC121228873 | Entrez gene ID : 121228873    
Species ghi ath bra bna cit gma vvi mtr sly sot nta osa zma hvu sbi bdi cre tae ppo
Paralog 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
Protein XP_040967814.1 [sequence] [blastp]
XP_040967816.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 3,  cyto_mito 2,  extr 1,  E.R. 1,  pero 1  (predict for XP_040967814.1)
chlo 4,  mito 3,  cyto_mito 2,  extr 1,  E.R. 1,  pero 1  (predict for XP_040967816.1)
Subcellular
localization
TargetP
chlo 3,  mito 3  (predict for XP_040967814.1)
chlo 3,  mito 3  (predict for XP_040967816.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121228873
ghi-r.1
for
107922417
ath-u.5
for
AT5G45790
bra-r.6
for
103827772
bna-r.1
for
111208735
bna-r.1
for
111198773
cit-r.1
for
102617783
gma-u.5
for
100789857
vvi-u.5
for
100243149
mtr-u.5
for
25499000
sly-u.5
for
101248441
sot-r.1
for
102602355
nta-r.1
for
107799291
nta-r.1
for
107777977
osa-u.5
for
9267918
zma-u.5
for
100502365
zma-u.5
for
103640669
hvu-r.1
for
123448190
sbi-r.1
for
8071429
bdi-r.1
for
100836990


Ortholog ID: 10980
Species ghi ghi ath bra bna bna cit gma vvi mtr sly sot nta nta osa zma zma hvu sbi bdi
Symbol LOC121228873 LOC107922417 AT5G45790 LOC103827772 LOC111208735 LOC111198773 LOC102617783 LOC100789857 LOC100243149 LOC25499000 LOC101248441 LOC102602355 LOC107799291 LOC107777977 LOC9267918 LOC100502365 LOC103640669 LOC123448190 LOC8071429 LOC100836990
Function* protein ROOT PRIMORDIUM DEFECTIVE 1 protein ROOT PRIMORDIUM DEFECTIVE 1 Ubiquitin carboxyl-terminal hydrolase family protein protein ROOT PRIMORDIUM DEFECTIVE 1 protein ROOT PRIMORDIUM DEFECTIVE 1-like protein ROOT PRIMORDIUM DEFECTIVE 1-like protein ROOT PRIMORDIUM DEFECTIVE 1 protein ROOT PRIMORDIUM DEFECTIVE 1 protein ROOT PRIMORDIUM DEFECTIVE 1 protein ROOT PRIMORDIUM DEFECTIVE 1 protein ROOT PRIMORDIUM DEFECTIVE 1 protein ROOT PRIMORDIUM DEFECTIVE 1 protein ROOT PRIMORDIUM DEFECTIVE 1 protein ROOT PRIMORDIUM DEFECTIVE 1-like protein ROOT PRIMORDIUM DEFECTIVE 1 uncharacterized LOC100502365 protein ROOT PRIMORDIUM DEFECTIVE 1-like protein ROOT PRIMORDIUM DEFECTIVE 1 protein ROOT PRIMORDIUM DEFECTIVE 1 protein ROOT PRIMORDIUM DEFECTIVE 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00430 Taurine and hypotaurine metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00510 N-Glycan biosynthesis 2
sbi00513 Various types of N-glycan biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121228873 107922417 834619 103827772 111208735 111198773 102617783 100789857 100243149 25499000 101248441 102602355 107799291 107777977 9267918 100502365 103640669 123448190 8071429 100836990
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