ATTED-II : GeneCoexpression result

Species	Gene	Description
ghi-r.1	121229544	tRNA ligase 1-like
ath-u.5	RNL	RNAligase
gma-u.5	100815563	tRNA ligase 1
vvi-u.5	100258617	tRNA ligase 1
ppo-u.5	18106204	tRNA ligase 1
mtr-u.5	25492457	tRNA ligase 1
sly-u.5	101247886	tRNA ligase 1
osa-u.5	4342624	tRNA ligase 1
zma-u.5	103632082	tRNA ligase 1

functional annotation

KEGG

GO BP

GO:0006388 [list] [network] tRNA splicing, via endonucleolytic cleavage and ligation

(25 genes)

IEA

GO CC

GO MF

GO:0003972 [list] [network] RNA ligase (ATP) activity

(6 genes)

IEA

Protein

XP_040970081.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 6, chlo 2, nucl 1

(predict for XP_040970081.1)

Subcellular
localization
TargetP

mito 7, chlo 3

(predict for XP_040970081.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 121229544	ath-u.5 for RNL	gma-u.5 for 100815563	vvi-u.5 for 100258617	ppo-u.5 for 18106204	mtr-u.5 for 25492457	sly-u.5 for 101247886	osa-u.5 for 4342624	zma-u.5 for 103632082

Ortholog ID: 4458

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

RNL

Function^*

tRNA ligase 1

RNAligase

tRNA ligase 1

tRNA ligase 1-like

tRNA ligase 1

uncharacterized LOC102604569

tRNA ligase 1

tRNA ligase 1-like

tRNA ligase 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	3
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	3
mtr04120	Ubiquitin mediated proteolysis	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	4
osa03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5
tae03020	RNA polymerase	3
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	4
sbi03008	Ribosome biogenesis in eukaryotes	2
sbi04120	Ubiquitin mediated proteolysis	2
sbi00240	Pyrimidine metabolism	2
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	4

Expression

Expression pattern

Entrez Gene ID^*

107952917

107922622

837306

103871536

103843428

106415140

106346374

102621146

100815563

100258617

18106204

25492457

101247886

102604569

107811332

107790870

4342624

103632082

123187714

123404926

123425006

8063662

100846175

100845723

5718201

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 121229544 (ghi-r.1 coexpression data)

Top 50 enrichment test to 121229544 (ghi-r.1 coexpression data)


Species	ghi	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	sot	nta	cre	tae
Paralog	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 121229544 (ghi-r.1 coexpression data)

Top 50 enrichment test to 121229544 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**