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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123040920   pentatricopeptide repeat-containing protein At5g65560 
 osa-u.5   4329793   pentatricopeptide repeat-containing protein At5g65560 
 osa-u.5   4341903   pentatricopeptide repeat-containing protein At5g65560 
 zma-u.5   103653689   pentatricopeptide repeat-containing protein At5g65560 
 zma-u.5   103651695   pentatricopeptide repeat-containing protein At5g65560 
 ath-u.5   AT5G65560   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100797910   pentatricopeptide repeat-containing protein At5g65560 
 sly-u.5   101247676   pentatricopeptide repeat-containing protein At5g65560 
 vvi-u.5   100255912   pentatricopeptide repeat-containing protein At5g65560 
 mtr-u.5   11408567   pentatricopeptide repeat-containing protein At5g65560 

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Top 50 coexpressed genes to 123040920 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123040920 (tae-r.2 coexpression data)

CoexMap"123040920"


taeLOC123040920 | Entrez gene ID : 123040920    
Species tae osa zma ath gma sly vvi mtr bdi hvu bra cit bna ppo sbi ghi sot nta cre
Paralog 1 2 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (862 genes)  IEA  
GO:0005515 [list] [network] protein binding  (16249 genes)  IEA  
Protein XP_044319576.1 [sequence] [blastp]
XP_044319583.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  chlo 3,  cyto_mito 3,  mito_plas 3  (predict for XP_044319576.1)
mito 6,  chlo 3,  cyto_mito 3,  mito_plas 3  (predict for XP_044319583.1)
Subcellular
localization
TargetP
chlo 3,  mito 3  (predict for XP_044319576.1)
chlo 3,  mito 3  (predict for XP_044319583.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123040920
osa-u.5
for
4329793
osa-u.5
for
4341903
zma-u.5
for
103653689
zma-u.5
for
103651695
ath-u.5
for
AT5G65560
gma-u.5
for
100797910
sly-u.5
for
101247676
vvi-u.5
for
100255912
mtr-u.5
for
11408567


Ortholog ID: 5004
Species tae tae hvu hvu bdi bdi osa osa zma zma sbi sbi ath gma sly bra vvi mtr ghi ghi bna sot sot cit nta nta
Symbol LOC123159070 LOC123148833 LOC123409173 LOC123427134 LOC100831293 LOC100843678 LOC4329793 LOC4341903 LOC103653689 LOC103651695 LOC8065112 LOC8070569 AT5G65560 LOC100797910 LOC101247676 LOC103873993 LOC100255912 LOC11408567 LOC107924247 LOC107945421 LOC106348116 LOC102593124 LOC102586323 LOC102625517 LOC107786258 LOC107831651
Function* pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560-like pentatricopeptide repeat-containing protein At5g65560-like pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560-like pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560 pentatricopeptide repeat-containing protein At5g65560-like pentatricopeptide repeat-containing protein At5g65560-like pentatricopeptide repeat-containing protein At5g65560 uncharacterized LOC107786258 uncharacterized LOC107831651
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 3
hvu00510 N-Glycan biosynthesis 2
hvu00513 Various types of N-glycan biosynthesis 2
hvu00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03083 Polycomb repressive complex 2
sbi03082 ATP-dependent chromatin remodeling 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
gma03250 Viral life cycle - HIV-1 2
gma00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr03430 Mismatch repair 2
mtr03040 Spliceosome 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123159070 123148833 123409173 123427134 100831293 100843678 4329793 4341903 103653689 103651695 8065112 8070569 836682 100797910 101247676 103873993 100255912 11408567 107924247 107945421 106348116 102593124 102586323 102625517 107786258 107831651
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