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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123045531   protein TIC 40, chloroplastic 
 osa-u.5   4335926   protein TIC 40, chloroplastic 
 zma-u.5   100283576   translocon Tic40 
 zma-u.5   100285102   translocon Tic40 
 ath-u.5   TIC40   hydroxyproline-rich glycoprotein family protein 
 gma-u.5   100790904   protein TIC 40, chloroplastic 
 gma-u.5   100781154   protein TIC 40, chloroplastic 
 sly-u.5   101251351   protein TIC 40, chloroplastic 
 vvi-u.5   100265473   protein TIC 40, chloroplastic 
 ppo-u.5   7493557   protein TIC 40, chloroplastic 
 ppo-u.5   18106637   protein TIC 40, chloroplastic 
 mtr-u.5   25489188   protein TIC 40, chloroplastic 

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Top 50 coexpressed genes to 123045531 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123045531 (tae-r.2 coexpression data)

CoexMap"123045531"


taeLOC123045531 | Entrez gene ID : 123045531    
Species tae osa zma ath gma sly vvi ppo mtr bdi hvu bra cit bna sbi ghi sot nta cre
Paralog 1 1 2 1 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045037 [list] [network] protein import into chloroplast stroma  (66 genes)  IEA  
GO:0009658 [list] [network] chloroplast organization  (164 genes)  IEA  
GO CC
GO:0009706 [list] [network] chloroplast inner membrane  (59 genes)  IEA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (303 genes)  IEA  
GO MF
Protein XP_044324542.1 [sequence] [blastp]
XP_044324543.1 [sequence] [blastp]
XP_044324544.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_044324542.1)
chlo 9  (predict for XP_044324543.1)
chlo 9  (predict for XP_044324544.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_044324542.1)
chlo 9  (predict for XP_044324543.1)
chlo 9  (predict for XP_044324544.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123045531
osa-u.5
for
4335926
zma-u.5
for
100283576
zma-u.5
for
100285102
ath-u.5
for
TIC40
gma-u.5
for
100790904
gma-u.5
for
100781154
sly-u.5
for
101251351
vvi-u.5
for
100265473
ppo-u.5
for
7493557
ppo-u.5
for
18106637
mtr-u.5
for
25489188


Ortholog ID: 7335
Species tae tae hvu bdi osa zma zma sbi ath gma gma sly bra bra vvi ppo ppo mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC123189284 LOC123053376 LOC123426787 LOC100844034 LOC4335926 LOC100285102 LOC100283576 LOC8080326 TIC40 LOC100781154 LOC100790904 LOC101251351 LOC103851058 LOC103846314 LOC100265473 LOC18106637 LOC7493557 LOC25489188 LOC107936809 LOC121232116 LOC125579023 LOC106423634 LOC102603856 LOC102621793 LOC107791726 LOC107763892 CHLRE_12g508000v5
Function* protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic translocon Tic40 translocon Tic40 protein TIC 40, chloroplastic hydroxyproline-rich glycoprotein family protein protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic-like protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic protein TIC 40, chloroplastic-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 4
tae00270 Cysteine and methionine metabolism 3
tae00280 Valine, leucine and isoleucine degradation 3
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00770 Pantothenate and CoA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 3
tae00280 Valine, leucine and isoleucine degradation 3
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00770 Pantothenate and CoA biosynthesis 3
tae00966 Glucosinolate biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 4
hvu01230 Biosynthesis of amino acids 3
hvu03040 Spliceosome 2
hvu04141 Protein processing in endoplasmic reticulum 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03060 Protein export 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 3
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 3
vvi00785 Lipoic acid metabolism 3
vvi00010 Glycolysis / Gluconeogenesis 2
vvi00020 Citrate cycle (TCA cycle) 2
vvi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00240 Pyrimidine metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr00061 Fatty acid biosynthesis 3
mtr01212 Fatty acid metabolism 3
mtr00620 Pyruvate metabolism 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
ghi00240 Pyrimidine metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
ghi00240 Pyrimidine metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi00062 Fatty acid elongation 2
ghi01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 2
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 3
nta01230 Biosynthesis of amino acids 3
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00750 Vitamin B6 metabolism 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 3
nta01230 Biosynthesis of amino acids 3
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00750 Vitamin B6 metabolism 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 4
cre03040 Spliceosome 3
cre04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123189284 123053376 123426787 100844034 4335926 100285102 100283576 8080326 831524 100781154 100790904 101251351 103851058 103846314 100265473 18106637 7493557 25489188 107936809 121232116 125579023 106423634 102603856 102621793 107791726 107763892 5716512
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