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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123053198   probable alpha-amylase 2 
 tae-r.2   123045358   probable alpha-amylase 2 
 tae-r.2   123189113   probable alpha-amylase 2 
 hvu-r.1   123426601   probable alpha-amylase 2 
 bdi-r.1   100824346   probable alpha-amylase 2 
 osa-u.5   4335737   probable alpha-amylase 2 
 zma-u.5   100273593   uncharacterized LOC100273593 
 sbi-r.1   8072062   probable alpha-amylase 2 
 ath-u.5   AMY2   alpha-amylase-like 2 
 gma-u.5   100813490   alpha-amylase-like 
 gma-u.5   100793671   probable alpha-amylase 2 
 sly-u.5   101250886   probable alpha-amylase 2 
 bra-r.6   103832061   probable alpha-amylase 2 
 vvi-u.5   100257481   probable alpha-amylase 2 
 ppo-u.5   7496889   probable alpha-amylase 2 
 mtr-u.5   11412615   probable alpha-amylase 2 
 ghi-r.1   107904981   probable alpha-amylase 2 
 ghi-r.1   107957617   probable alpha-amylase 2 
 ghi-r.1   107938137   probable alpha-amylase 2 
 bna-r.1   106405826   probable alpha-amylase 2 
 bna-r.1   106421656   probable alpha-amylase 2 
 sot-r.1   AMYA1   alpha-amylase 
 cit-r.1   102625798   probable alpha-amylase 2 
 nta-r.1   107780204   putative alpha-amylase 2 
 cre-r.1   CHLRE_08g362450v5   uncharacterized protein 

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Top 50 coexpressed genes to 123053198 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123053198 (tae-r.2 coexpression data)

CoexMap"123053198"


taeLOC123053198 | Entrez gene ID : 123053198    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 1 1 1 1 2 1 1 1 1 1 3 2 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes00500 [list] [network] Starch and sucrose metabolism (558 genes)
GO BP
GO:0005975 [list] [network] carbohydrate metabolic process  (2549 genes)  IEA  
GO CC
GO MF
GO:0004556 [list] [network] alpha-amylase activity  (34 genes)  IEA  
GO:0005509 [list] [network] calcium ion binding  (1095 genes)  IEA  
Protein XP_044332555.1 [sequence] [blastp]
XP_044332556.1 [sequence] [blastp]
XP_044332557.1 [sequence] [blastp]
XP_044332558.1 [sequence] [blastp]
XP_044332560.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cysk 1,  cyto 1,  cysk_plas 1,  vacu 1,  pero 1,  cyto_E.R. 1  (predict for XP_044332555.1)
nucl 5,  cysk 1,  cyto 1,  cysk_plas 1,  vacu 1,  pero 1,  cyto_E.R. 1  (predict for XP_044332556.1)
nucl 4,  cysk 4,  cysk_nucl 4  (predict for XP_044332557.1)
nucl 4,  cysk 4,  cysk_nucl 4  (predict for XP_044332558.1)
nucl 3,  cyto 3,  cyto_nucl 3,  cysk 2  (predict for XP_044332560.1)
Subcellular
localization
TargetP
other 7  (predict for XP_044332555.1)
other 7  (predict for XP_044332556.1)
other 7  (predict for XP_044332557.1)
other 7  (predict for XP_044332558.1)
other 7  (predict for XP_044332560.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123053198
tae-r.2
for
123045358
tae-r.2
for
123189113
hvu-r.1
for
123426601
bdi-r.1
for
100824346
osa-u.5
for
4335737
zma-u.5
for
100273593
sbi-r.1
for
8072062
ath-u.5
for
AMY2
gma-u.5
for
100813490
gma-u.5
for
100793671
sly-u.5
for
101250886
bra-r.6
for
103832061
vvi-u.5
for
100257481
ppo-u.5
for
7496889
mtr-u.5
for
11412615
ghi-r.1
for
107904981
ghi-r.1
for
107957617
ghi-r.1
for
107938137
bna-r.1
for
106405826
bna-r.1
for
106421656
sot-r.1
for
AMYA1
cit-r.1
for
102625798
nta-r.1
for
107780204
cre-r.1
for
CHLRE_08g362450v5


Ortholog ID: 10556
Species tae tae tae hvu bdi osa zma sbi ath gma gma sly bra vvi ppo mtr ghi ghi ghi bna bna sot cit nta cre
Symbol LOC123053198 LOC123045358 LOC123189113 LOC123426601 LOC100824346 LOC4335737 LOC100273593 LOC8072062 AMY2 LOC100813490 LOC100793671 LOC101250886 LOC103832061 LOC100257481 LOC7496889 LOC11412615 LOC107904981 LOC107957617 LOC107938137 LOC106405826 LOC106421656 AMYA1 LOC102625798 LOC107780204 CHLRE_08g362450v5
Function* probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 uncharacterized LOC100273593 probable alpha-amylase 2 alpha-amylase-like 2 alpha-amylase-like probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 alpha-amylase probable alpha-amylase 2 putative alpha-amylase 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04136 Autophagy - other 3
osa00600 Sphingolipid metabolism 2
osa04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 2
bra04120 Ubiquitin mediated proteolysis 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00910 Nitrogen metabolism 3
ghi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
ghi04626 Plant-pathogen interaction 3
ghi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 2
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 2
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 6
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit01250 Biosynthesis of nucleotide sugars 2
cit00564 Glycerophospholipid metabolism 2
cit00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 6
nta03083 Polycomb repressive complex 4
nta04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 7
cre01230 Biosynthesis of amino acids 5
cre00500 Starch and sucrose metabolism 5
cre00030 Pentose phosphate pathway 5
cre00010 Glycolysis / Gluconeogenesis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123053198 123045358 123189113 123426601 100824346 4335737 100273593 8072062 843945 100813490 100793671 101250886 103832061 100257481 7496889 11412615 107904981 107957617 107938137 106405826 106421656 102577485 102625798 107780204 5721598
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