ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123061056	lysosomal amino acid transporter 1 homolog
tae-r.2	123069643	lysosomal amino acid transporter 1 homolog
tae-r.2	123078127	uncharacterized LOC123078127
hvu-r.1	123443476	lysosomal amino acid transporter 1 homolog
bdi-r.1	100836633	uncharacterized LOC100836633
osa-u.5	4324377	vacuolar lysine transporter YPQ1
zma-u.5	100273653	PQ loop repeat family protein
zma-u.5	100304285	PQ-loop repeat family protein / transmembrane family protein
sbi-r.1	8074511	uncharacterized LOC8074511
ath-u.5	AT2G41050	PQ-loop repeat family protein / transmembrane family protein
ath-u.5	AT4G36850	PQ-loop repeat family protein / transmembrane family protein
gma-u.5	100780977	uncharacterized LOC100780977
gma-u.5	100787660	lysosomal amino acid transporter 1
gma-u.5	100789634	PQ-loop repeat-containing protein
sly-u.5	101258619	vacuolar lysine transporter YPQ1
bra-r.6	103865430	probable vacuolar amino acid transporter YPQ3
bra-r.6	103866528	uncharacterized LOC103866528
vvi-u.5	100853498	uncharacterized LOC100853498
vvi-u.5	100240998	probable vacuolar amino acid transporter YPQ1
ppo-u.5	18101206	uncharacterized LOC18101206
mtr-u.5	11405854	seven transmembrane protein 1
mtr-u.5	11422546	lysosomal amino acid transporter 1 homolog
ghi-r.1	107926537	probable vacuolar amino acid transporter YPQ3
ghi-r.1	107909362	probable vacuolar amino acid transporter YPQ1
ghi-r.1	107891363	probable vacuolar amino acid transporter YPQ2
bna-r.1	106429842	probable vacuolar amino acid transporter YPQ3
bna-r.1	106390168	uncharacterized LOC106390168
bna-r.1	125575608	uncharacterized LOC125575608
sot-r.1	102581565	probable vacuolar amino acid transporter YPQ2
cit-r.1	102626245	probable vacuolar amino acid transporter YPQ1
cit-r.1	102608727	uncharacterized LOC102608727
nta-r.1	107826224	vacuolar histidine transporter YPQ3
nta-r.1	107823421	vacuolar histidine transporter YPQ3
nta-r.1	107771280	vacuolar lysine transporter YPQ1
cre-r.1	CHLRE_06g278191v5	uncharacterized protein

Top 50 coexpressed genes to 123061056 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123061056 (tae-r.2 coexpression data)

CoexMap"123061056"

[Cytoscape]

Annotation

functional annotation

KEGG

taes04148 [list] [network] Efferocytosis (163 genes)

GO BP

GO CC

GO:0016020 [list] [network] membrane

(10843 genes)

IEA

GO MF

Protein

XP_044339895.1 [sequence] [blastp]
XP_044339896.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 1, plas 1, E.R. 1, cysk_nucl 1, E.R._plas 1	(predict for XP_044339895.1)
chlo 4, nucl 1, plas 1, E.R. 1, cysk_nucl 1, E.R._plas 1	(predict for XP_044339896.1)

Subcellular
localization
TargetP

other 8	(predict for XP_044339895.1)
other 8	(predict for XP_044339896.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123061056	tae-r.2 for 123069643	tae-r.2 for 123078127	hvu-r.1 for 123443476	bdi-r.1 for 100836633	osa-u.5 for 4324377	zma-u.5 for 100273653	zma-u.5 for 100304285	sbi-r.1 for 8074511	ath-u.5 for AT2G41050	ath-u.5 for AT4G36850	gma-u.5 for 100780977	gma-u.5 for 100787660	gma-u.5 for 100789634	sly-u.5 for 101258619	bra-r.6 for 103865430	bra-r.6 for 103866528	vvi-u.5 for 100853498	vvi-u.5 for 100240998	ppo-u.5 for 18101206	mtr-u.5 for 11405854	mtr-u.5 for 11422546	ghi-r.1 for 107926537	ghi-r.1 for 107909362	ghi-r.1 for 107891363	bna-r.1 for 106429842	bna-r.1 for 106390168	bna-r.1 for 125575608	sot-r.1 for 102581565	cit-r.1 for 102626245	cit-r.1 for 102608727	nta-r.1 for 107826224	nta-r.1 for 107823421	nta-r.1 for 107771280	cre-r.1 for CHLRE_06g278191v5

Ortholog

Ortholog ID: 3919

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

lysosomal amino acid transporter 1 homolog

uncharacterized LOC123078127

lysosomal amino acid transporter 1 homolog

uncharacterized LOC100836633

vacuolar lysine transporter YPQ1

PQ loop repeat family protein

PQ-loop repeat family protein / transmembrane family protein

uncharacterized LOC8074511

PQ-loop repeat family protein / transmembrane family protein

uncharacterized LOC100780977

PQ-loop repeat-containing protein

probable vacuolar amino acid transporter YPQ1

vacuolar lysine transporter YPQ1

probable vacuolar amino acid transporter YPQ3

uncharacterized LOC103866528

uncharacterized LOC100853498

probable vacuolar amino acid transporter YPQ1

uncharacterized LOC18101206

seven transmembrane protein 1

lysosomal amino acid transporter 1 homolog

probable vacuolar amino acid transporter YPQ3

probable vacuolar amino acid transporter YPQ2

seven transmembrane protein 1

probable vacuolar amino acid transporter YPQ3

uncharacterized LOC106390168

probable vacuolar amino acid transporter YPQ3

probable vacuolar amino acid transporter YPQ2

probable vacuolar amino acid transporter YPQ1

uncharacterized LOC102608727

vacuolar histidine transporter YPQ3

vacuolar lysine transporter YPQ1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04148	Efferocytosis	3
tae00330	Arginine and proline metabolism	3
tae01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04148	Efferocytosis	3
tae00330	Arginine and proline metabolism	3
tae01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00564	Glycerophospholipid metabolism	3
tae00330	Arginine and proline metabolism	3
tae01230	Biosynthesis of amino acids	3
tae04148	Efferocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01240	Biosynthesis of cofactors	3
hvu00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01240	Biosynthesis of cofactors	2
osa01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04148	Efferocytosis	2
zma00250	Alanine, aspartate and glutamate metabolism	2
zma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01230	Biosynthesis of amino acids	5
zma00020	Citrate cycle (TCA cycle)	3
zma01200	Carbon metabolism	3
zma01210	2-Oxocarboxylic acid metabolism	3
zma04082	Neuroactive ligand signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00230	Purine metabolism	2
gma00240	Pyrimidine metabolism	2
gma01232	Nucleotide metabolism	2
gma01240	Biosynthesis of cofactors	2
gma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04148	Efferocytosis	2
gma00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
gma00350	Tyrosine metabolism	2
gma00360	Phenylalanine metabolism	2
gma00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	2
gma00250	Alanine, aspartate and glutamate metabolism	2
gma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00260	Glycine, serine and threonine metabolism	2
bra00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	2
bra04712	Circadian rhythm - plant	2
bra00760	Nicotinate and nicotinamide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00906	Carotenoid biosynthesis	3
vvi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01230	Biosynthesis of amino acids	2
ppo00710	Carbon fixation by Calvin cycle	2
ppo01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00280	Valine, leucine and isoleucine degradation	2
mtr01230	Biosynthesis of amino acids	2
mtr01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00280	Valine, leucine and isoleucine degradation	5
mtr00310	Lysine degradation	2
mtr00260	Glycine, serine and threonine metabolism	2
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	3
ghi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	4
ghi00071	Fatty acid degradation	3
ghi00350	Tyrosine metabolism	3
ghi00592	alpha-Linolenic acid metabolism	3
ghi00620	Pyruvate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	2
ghi00290	Valine, leucine and isoleucine biosynthesis	2
ghi00660	C5-Branched dibasic acid metabolism	2
ghi00966	Glucosinolate biosynthesis	2
ghi01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	2
bna04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00561	Glycerolipid metabolism	3
bna04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	2
bna04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01200	Carbon metabolism	4
cit01240	Biosynthesis of cofactors	3
cit00030	Pentose phosphate pathway	2
cit00020	Citrate cycle (TCA cycle)	2
cit01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04148	Efferocytosis	2
nta00270	Cysteine and methionine metabolism	2
nta00543	Exopolysaccharide biosynthesis	2
nta00920	Sulfur metabolism	2
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04145	Phagosome	2
nta04517	IgSF CAM signaling	2
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04148	Efferocytosis	2
nta00270	Cysteine and methionine metabolism	2
nta00543	Exopolysaccharide biosynthesis	2
nta00920	Sulfur metabolism	2
nta01200	Carbon metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

123061056

123069643

123078127

123443476

100836633

4324377

100273653

100304285

8074511

818704

829838

100780977

100789634

100776511

101258619

103865430

103866528

100853498

100240998

18101206

11405854

11422546

107926537

107891363

121209681

106429842

106390168

125608219

102581565

102626245

102608727

107826224

107823421

107771280

66053703

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Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	1	1	1	2	1	2	3	1	2	2	1	2	3	3	1	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123061056 (tae-r.2 coexpression data)

Top 50 enrichment test to 123061056 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**