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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123061721   protein VACUOLELESS1 
 osa-u.5   4326864   protein VACUOLELESS1 
 zma-u.5   103636149   protein VACUOLELESS1 
 ath-u.5   VCL1   vacuoleless1 (VCL1) 
 gma-u.5   100817661   protein VACUOLELESS1 
 gma-u.5   100812079   protein VACUOLELESS1 
 sly-u.5   101250423   protein VACUOLELESS1 
 vvi-u.5   100260824   protein VACUOLELESS1 
 ppo-u.5   7468728   protein VACUOLELESS1 
 ppo-u.5   7464653   protein VACUOLELESS1 
 mtr-u.5   11407131   protein VACUOLELESS1 

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Top 50 coexpressed genes to 123061721 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123061721 (tae-r.2 coexpression data)

CoexMap"123061721"


taeLOC123061721 | Entrez gene ID : 123061721    
Species tae osa zma ath gma sly vvi ppo mtr hvu cit bra ghi sbi bdi nta bna cre sot
Paralog 1 1 1 1 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes04148 [list] [network] Efferocytosis (163 genes)
GO BP
GO:0042144 [list] [network] vacuole fusion, non-autophagic  (3 genes)  IEA  
GO:0016197 [list] [network] endosomal transport  (178 genes)  IEA  
GO:0006886 [list] [network] intracellular protein transport  (789 genes)  IEA  
GO CC
GO:0030897 [list] [network] HOPS complex  (17 genes)  IEA  
GO:0005765 [list] [network] lysosomal membrane  (27 genes)  IEA  
GO:0005768 [list] [network] endosome  (407 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13575 genes)  IEA  
GO MF
GO:0003779 [list] [network] actin binding  (259 genes)  IEA  
Protein XP_044340874.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  cyto 3,  cyto_nucl 3,  vacu 1,  E.R._vacu 1  (predict for XP_044340874.1)
Subcellular
localization
TargetP
other 5  (predict for XP_044340874.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123061721
osa-u.5
for
4326864
zma-u.5
for
103636149
ath-u.5
for
VCL1
gma-u.5
for
100817661
gma-u.5
for
100812079
sly-u.5
for
101250423
vvi-u.5
for
100260824
ppo-u.5
for
7468728
ppo-u.5
for
7464653
mtr-u.5
for
11407131


Ortholog ID: 9425
Species tae tae hvu bdi osa zma sbi ath gma gma sly bra vvi ppo ppo mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC123070305 LOC123078756 LOC123444053 LOC100824908 LOC4326864 LOC103636149 LOC8060148 VCL1 LOC100812079 LOC100817661 LOC101250423 LOC103857755 LOC100260824 LOC7468728 LOC7464653 LOC11407131 LOC107954851 LOC107955701 LOC106438171 LOC106427750 LOC102604066 LOC102617306 LOC107828785 LOC107798004 CHLRE_03g199311v5
Function* protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 vacuoleless1 (VCL1) protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1-like protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1 protein VACUOLELESS1-like protein VACUOLELESS1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 4
sbi04142 Lysosome 3
sbi04144 Endocytosis 3
sbi05100 Bacterial invasion of epithelial cells 2
sbi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04148 Efferocytosis 4
ath04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 6
gma04148 Efferocytosis 2
gma04075 Plant hormone signal transduction 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 6
gma04148 Efferocytosis 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 3
sly04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04148 Efferocytosis 3
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 4
ppo04144 Endocytosis 4
ppo05100 Bacterial invasion of epithelial cells 3
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr03420 Nucleotide excision repair 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 7
ghi04142 Lysosome 4
ghi05100 Bacterial invasion of epithelial cells 4
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 7
ghi04142 Lysosome 4
ghi05100 Bacterial invasion of epithelial cells 4
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 2
bna04146 Peroxisome 2
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 2
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
sot00900 Terpenoid backbone biosynthesis 2
sot00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 4
cit04120 Ubiquitin mediated proteolysis 3
cit04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
nta04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 4
nta03083 Polycomb repressive complex 2
nta04148 Efferocytosis 2
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 4
cre00510 N-Glycan biosynthesis 3
cre03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123070305 123078756 123444053 100824908 4326864 103636149 8060148 818380 100812079 100817661 101250423 103857755 100260824 7468728 7464653 11407131 107954851 107955701 106438171 106427750 102604066 102617306 107828785 107798004 5725018
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