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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123062660   WD repeat-containing protein ATCSA-1 
 tae-r.2   123071480   WD repeat-containing protein ATCSA-1 
 tae-r.2   123079817   WD repeat-containing protein ATCSA-1 
 hvu-r.1   123444848   WD repeat-containing protein ATCSA-1-like 
 bdi-r.1   100837859   DNA excision repair protein ERCC-8 
 osa-u.5   4329118   WD repeat-containing protein ATCSA-1 
 osa-u.5   4324761   WD repeat-containing protein ATCSA-1 
 zma-u.5   100275606   uncharacterized LOC100275606 
 sbi-r.1   8058940   DNA excision repair protein ERCC-8 
 ath-u.5   ATCSA-1   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100815581   WD repeat-containing protein ATCSA-1 
 gma-u.5   100790433   WD repeat-containing protein ATCSA-1 
 sly-u.5   101255378   WD repeat-containing protein ATCSA-1 
 bra-r.6   103839014   WD repeat-containing protein ATCSA-1 
 vvi-u.5   100247086   WD repeat-containing protein ATCSA-1 
 ppo-u.5   7497327   WD repeat-containing protein ATCSA-1 
 mtr-u.5   25489968   WD repeat-containing protein ATCSA-1 
 ghi-r.1   107957912   WD repeat-containing protein ATCSA-1 
 ghi-r.1   107958189   WD repeat-containing protein ATCSA-1 
 bna-r.1   106367306   WD repeat-containing protein ATCSA-1 
 bna-r.1   106431654   WD repeat-containing protein ATCSA-1 
 sot-r.1   102590960   DNA excision repair protein ERCC-8 
 cit-r.1   102614817   WD repeat-containing protein ATCSA-1-like 
 nta-r.1   107816950   WD repeat-containing protein ATCSA-1 
 nta-r.1   107769413   WD repeat-containing protein ATCSA-1 
 cre-r.1   CHLRE_01g032100v5   uncharacterized protein 
 cre-r.1   CHLRE_01g032139v5   uncharacterized protein 

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Top 50 coexpressed genes to 123062660 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123062660 (tae-r.2 coexpression data)

CoexMap"123062660"


taeLOC123062660 | Entrez gene ID : 123062660    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 2 1 1 1 2 1 1 1 1 1 2 2 1 1 2 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes03420 [list] [network] Nucleotide excision repair (265 genes)
taes04120 [list] [network] Ubiquitin mediated proteolysis (715 genes)
GO BP
GO:0006283 [list] [network] transcription-coupled nucleotide-excision repair  (20 genes)  IEA  
GO:0000209 [list] [network] protein polyubiquitination  (109 genes)  IEA  
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (397 genes)  IEA  
GO CC
GO:0000109 [list] [network] nucleotide-excision repair complex  (15 genes)  IEA  
GO:0031464 [list] [network] Cul4A-RING E3 ubiquitin ligase complex  (25 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (16249 genes)  IEA  
Protein XP_044342207.1 [sequence] [blastp]
XP_044342208.1 [sequence] [blastp]
XP_044342210.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1,  vacu 1  (predict for XP_044342207.1)
nucl 9,  cyto 1,  vacu 1  (predict for XP_044342208.1)
nucl 4,  chlo 3,  extr 2,  cyto 1,  chlo_mito 1  (predict for XP_044342210.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_044342207.1)
mito 8  (predict for XP_044342208.1)
other 6,  scret 5  (predict for XP_044342210.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123062660
tae-r.2
for
123071480
tae-r.2
for
123079817
hvu-r.1
for
123444848
bdi-r.1
for
100837859
osa-u.5
for
4329118
osa-u.5
for
4324761
zma-u.5
for
100275606
sbi-r.1
for
8058940
ath-u.5
for
ATCSA-1
gma-u.5
for
100815581
gma-u.5
for
100790433
sly-u.5
for
101255378
bra-r.6
for
103839014
vvi-u.5
for
100247086
ppo-u.5
for
7497327
mtr-u.5
for
25489968
ghi-r.1
for
107957912
ghi-r.1
for
107958189
bna-r.1
for
106367306
bna-r.1
for
106431654
sot-r.1
for
102590960
cit-r.1
for
102614817
nta-r.1
for
107816950
nta-r.1
for
107769413
cre-r.1
for
CHLRE_01g032100v5
cre-r.1
for
CHLRE_01g032139v5


Ortholog ID: 8703
Species tae tae tae hvu bdi osa osa zma sbi ath gma gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta cre cre
Symbol LOC123062660 LOC123071480 LOC123079817 LOC123444848 LOC100837859 LOC4329118 LOC4324761 LOC100275606 LOC8058940 ATCSA-1 LOC100815581 LOC100790433 LOC101255378 LOC103839014 LOC100247086 LOC7497327 LOC25489968 LOC107957912 LOC107958189 LOC106367306 LOC106431654 LOC102590960 LOC102614817 LOC107816950 LOC107769413 CHLRE_01g032100v5 CHLRE_01g032139v5
Function* WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1-like DNA excision repair protein ERCC-8 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 uncharacterized LOC100275606 DNA excision repair protein ERCC-8 Transducin/WD40 repeat-like superfamily protein WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 DNA excision repair protein ERCC-8 WD repeat-containing protein ATCSA-1-like WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
gma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00280 Valine, leucine and isoleucine degradation 4
sly00310 Lysine degradation 2
sly00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra04120 Ubiquitin mediated proteolysis 2
bra04382 Cornified envelope formation 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00650 Butanoate metabolism 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
bna03040 Spliceosome 2
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot04136 Autophagy - other 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00290 Valine, leucine and isoleucine biosynthesis 2
nta00770 Pantothenate and CoA biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00290 Valine, leucine and isoleucine biosynthesis 2
nta00770 Pantothenate and CoA biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123062660 123071480 123079817 123444848 100837859 4329118 4324761 100275606 8058940 839677 100815581 100790433 101255378 103839014 100247086 7497327 25489968 107957912 107958189 106367306 106431654 102590960 102614817 107816950 107769413 66052081 5715396
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