ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123079090	reticulon-like protein B1
tae-r.2	123070677	reticulon-like protein B1
hvu-r.1	123443230	reticulon-like protein B1
hvu-r.1	123444349	reticulon-like protein B1
bdi-r.1	100844995	reticulon-like protein B2
bdi-r.1	100844372	reticulon-like protein B1
bdi-r.1	100842730	reticulon-like protein B1
osa-u.5	4342374	reticulon-like protein B8
zma-u.5	100283096	seed maturation protein
zma-u.5	100283279	dehydrin6
zma-u.5	100284105	seed maturation protein
sbi-r.1	110434999	reticulon-like protein B2
sbi-r.1	8074554	reticulon-like protein B9
ath-u.5	AT2G46170	Reticulon family protein
ath-u.5	AT1G68230	Reticulon family protein
ath-u.5	RTNLB3	Reticulan like protein B3
gma-u.5	100306402	uncharacterized LOC100306402
gma-u.5	100796111	reticulon-like protein B5-like
gma-u.5	100809028	reticulon-like protein B9
sly-u.5	101259405	reticulon-like protein B8
sly-u.5	101260015	reticulon-like protein B2
bra-r.6	103834960	reticulon-like protein B1
bra-r.6	103861418	reticulon-like protein B1
bra-r.6	103836883	reticulon-like protein B7
vvi-u.5	104879950	reticulon-like protein B2
vvi-u.5	100241363	reticulon-like protein B1
ppo-u.5	7492738	reticulon-like protein B5
ppo-u.5	7453887	reticulon-like protein B9
ppo-u.5	7457367	reticulon-like protein B5
mtr-u.5	11436594	reticulon-like protein B8
mtr-u.5	120577351	reticulon-like protein B9
ghi-r.1	107947066	reticulon-like protein B3
ghi-r.1	107950631	reticulon-like protein B4
bna-r.1	125593224	reticulon-like protein B7
bna-r.1	125574992	reticulon-like protein B8
bna-r.1	125577082	reticulon-like protein B1
sot-r.1	102582810	reticulon-like protein B9
sot-r.1	102577556	reticulon-like protein B2
cit-r.1	102620513	reticulon-like protein B3
nta-r.1	107830163	reticulon-like protein B4
nta-r.1	107790060	reticulon-like protein B5
cre-r.1	CHLRE_16g689087v5	uncharacterized protein
cre-r.1	CHLRE_06g308950v5	uncharacterized protein

Top 50 coexpressed genes to 123079090 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123079090 (tae-r.2 coexpression data)

CoexMap"123064613"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0009617 [list] [network] response to bacterium

(90 genes)

IEA

GO CC

GO MF

Protein

XP_044343993.1 [sequence] [blastp]

Subcellular
localization
wolf

pero 3, cyto 2, chlo 1, mito 1, vacu 1, chlo_mito 1

(predict for XP_044343993.1)

Subcellular
localization
TargetP

mito 8, other 4

(predict for XP_044343993.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123079090	tae-r.2 for 123070677	hvu-r.1 for 123443230	hvu-r.1 for 123444349	bdi-r.1 for 100844995	bdi-r.1 for 100844372	bdi-r.1 for 100842730	osa-u.5 for 4342374	zma-u.5 for 100283096	zma-u.5 for 100283279	zma-u.5 for 100284105	sbi-r.1 for 110434999	sbi-r.1 for 8074554	ath-u.5 for AT2G46170	ath-u.5 for AT1G68230	ath-u.5 for RTNLB3	gma-u.5 for 100306402	gma-u.5 for 100796111	gma-u.5 for 100809028	sly-u.5 for 101259405	sly-u.5 for 101260015	bra-r.6 for 103834960	bra-r.6 for 103861418	bra-r.6 for 103836883	vvi-u.5 for 104879950	vvi-u.5 for 100241363	ppo-u.5 for 7492738	ppo-u.5 for 7453887	ppo-u.5 for 7457367	mtr-u.5 for 11436594	mtr-u.5 for 120577351	ghi-r.1 for 107947066	ghi-r.1 for 107950631	bna-r.1 for 125593224	bna-r.1 for 125574992	bna-r.1 for 125577082	sot-r.1 for 102582810	sot-r.1 for 102577556	cit-r.1 for 102620513	nta-r.1 for 107830163	nta-r.1 for 107790060	cre-r.1 for CHLRE_16g689087v5	cre-r.1 for CHLRE_06g308950v5

Ortholog

Ortholog ID: 116

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

BTI1

Function^*

reticulon-like protein B2

reticulon-like protein B1

reticulon-like protein B4

reticulon-like protein B1

reticulon-like protein B8

reticulon-like protein B9

reticulon-like protein B1

uncharacterized LOC100282693

seed maturation protein

Seed maturation protein

reticulon-like protein B9

reticulon-like protein B1

Reticulon family protein

VIRB2-interacting protein 1

reticulon-like protein B5

reticulon-like protein B8-like

reticulon-like protein B5-like

reticulon-like protein B1

reticulon-like protein B9

reticulon-like protein B1

reticulon-like protein B3

reticulon-like protein B8

reticulon-like protein B5

reticulon-like protein B2

reticulon-like protein B1

reticulon-like protein B8

reticulon-like protein B9

reticulon-like protein B8

reticulon-like protein B3

reticulon-like protein B5

reticulon-like protein B3

reticulon-like protein B5

reticulon-like protein B9

reticulon-like protein B8

reticulon-like protein B1

reticulon-like protein B3

reticulon-like protein B2

reticulon-like protein B5

reticulon-like protein B8

reticulon-like protein B5

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	6
tae04814	Motor proteins	5
tae03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00071	Fatty acid degradation	3
tae03083	Polycomb repressive complex	2
tae04120	Ubiquitin mediated proteolysis	2
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	5
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3
hvu04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	3
osa00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04814	Motor proteins	3
osa00520	Amino sugar and nucleotide sugar metabolism	3
osa01250	Biosynthesis of nucleotide sugars	3
osa00061	Fatty acid biosynthesis	2
osa00780	Biotin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00040	Pentose and glucuronate interconversions	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00480	Glutathione metabolism	2
sbi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	5
gma00270	Cysteine and methionine metabolism	4
gma01200	Carbon metabolism	4
gma00260	Glycine, serine and threonine metabolism	3
gma00750	Vitamin B6 metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04142	Lysosome	2
sly04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
bra01230	Biosynthesis of amino acids	5
bra00920	Sulfur metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	4
ppo03050	Proteasome	3
ppo04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	4
ghi03460	Fanconi anemia pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00330	Arginine and proline metabolism	2
bna00410	beta-Alanine metabolism	2
bna00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
bna01240	Biosynthesis of cofactors	4
bna00330	Arginine and proline metabolism	2
bna00410	beta-Alanine metabolism	2
bna00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	8
sot04142	Lysosome	8
sot04145	Phagosome	7
sot00561	Glycerolipid metabolism	2
sot00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot04141	Protein processing in endoplasmic reticulum	4
sot04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	2
cit04814	Motor proteins	2
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00592	alpha-Linolenic acid metabolism	3
cit03022	Basal transcription factors	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	3
cit00052	Galactose metabolism	2
cit00520	Amino sugar and nucleotide sugar metabolism	2
cit01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	6
nta04145	Phagosome	6
nta04517	IgSF CAM signaling	6
nta04814	Motor proteins	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00500	Starch and sucrose metabolism	2
cre00010	Glycolysis / Gluconeogenesis	2
cre00030	Pentose phosphate pathway	2
cre00051	Fructose and mannose metabolism	2
cre00052	Galactose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

123161103

123060769

123141132

123443230

123448944

123407639

100844372

100837161

100846402

4342374

4325472

4326742

100282693

100217189

100191576

8074554

110433851

819224

828463

100779788

100787981

100793862

101259083

101258243

101262660

103838233

103870479

103847698

100267805

7457367

7472736

18105638

11436594

120577351

107914521

107896832

107890693

106450701

106366486

106450700

102582810

102601510

102606390

102620513

102609187

102625122

107768346

107827488

5724461

66053917

The preparation time of this page was 0.2 [sec].


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	2	3	1	3	2	3	3	2	3	2	3	2	2	3	2	1	2	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123079090 (tae-r.2 coexpression data)

Top 50 enrichment test to 123079090 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**