ATTED-II : GeneCoexpression result

Species	Gene	Description
tae-r.2	123071612	splicing regulator RBM11
tae-r.2	123134273	RNA-binding protein 7
tae-r.2	123079955	splicing regulator RBM11
tae-r.2	123056871	RNA-binding protein 7
hvu-r.1	123443116	spliceosome-associated protein 49
hvu-r.1	123444750	splicing regulator RBM11-like
bdi-r.1	100841208	spliceosome-associated protein 49
bdi-r.1	104582652	splicing regulator RBM11
osa-u.5	107277261	uncharacterized LOC107277261
osa-u.5	4338860	uncharacterized LOC4338860
zma-u.5	100384862	RNA recognition motif-containing protein
zma-u.5	103650933	splicing factor 3B subunit 4
zma-u.5	100193321	uncharacterized LOC100193321
sbi-r.1	110430206	splicing factor 3B subunit 4-like
ath-u.5	AT4G10110	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100803118	splicing factor 3B subunit 4
gma-u.5	100784532	splicing factor 3B subunit 4-like
sly-u.5	101258326	uncharacterized LOC101258326
bra-r.6	103838899	RNA-binding protein 7
vvi-u.5	100252755	hypothetical protein
vvi-u.5	100244774	uncharacterized LOC100244774
ppo-u.5	18108414	uncharacterized LOC18108414
mtr-u.5	11408527	RNA-binding protein 7
ghi-r.1	121216283	RNA-binding protein 7
ghi-r.1	107959793	RNA-binding protein 7
bna-r.1	106359693	spliceosome-associated protein 49
bna-r.1	106439150	splicing factor 3B subunit 4
sot-r.1	102602409	splicing factor 3B subunit 4
cit-r.1	102612062	uncharacterized LOC102612062
nta-r.1	107816527	uncharacterized LOC107816527
nta-r.1	107806640	uncharacterized LOC107806640
nta-r.1	107777009	organelle RRM domain-containing protein 6, chloroplastic-like

Annotation

functional annotation

KEGG

taes03040 [list] [network] Spliceosome (1516 genes)

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(4004 genes)

IEA

Protein

XP_044351128.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 3, nucl 1, pero 1

(predict for XP_044351128.1)

Subcellular
localization
TargetP

other 7

(predict for XP_044351128.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123071612	tae-r.2 for 123134273	tae-r.2 for 123079955	tae-r.2 for 123056871	hvu-r.1 for 123443116	hvu-r.1 for 123444750	bdi-r.1 for 100841208	bdi-r.1 for 104582652	osa-u.5 for 107277261	osa-u.5 for 4338860	zma-u.5 for 100384862	zma-u.5 for 103650933	zma-u.5 for 100193321	sbi-r.1 for 110430206	ath-u.5 for AT4G10110	gma-u.5 for 100803118	gma-u.5 for 100784532	sly-u.5 for 101258326	bra-r.6 for 103838899	vvi-u.5 for 100252755	vvi-u.5 for 100244774	ppo-u.5 for 18108414	mtr-u.5 for 11408527	ghi-r.1 for 121216283	ghi-r.1 for 107959793	bna-r.1 for 106359693	bna-r.1 for 106439150	sot-r.1 for 102602409	cit-r.1 for 102612062	nta-r.1 for 107816527	nta-r.1 for 107806640	nta-r.1 for 107777009

Ortholog

Ortholog ID: 6296

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

RNA-binding protein 7

splicing regulator RBM11

RNA-binding protein 7

spliceosome-associated protein 49

splicing regulator RBM11-like

spliceosome-associated protein 49

splicing regulator RBM11

uncharacterized LOC107277261

uncharacterized LOC4338860

RNA recognition motif-containing protein

splicing factor 3B subunit 4

uncharacterized LOC100193321

splicing factor 3B subunit 4-like

RNA-binding (RRM/RBD/RNP motifs) family protein

splicing factor 3B subunit 4

splicing factor 3B subunit 4-like

uncharacterized LOC101258326

RNA-binding protein 7

hypothetical protein

uncharacterized LOC100244774

uncharacterized LOC18108414

RNA-binding protein 7

spliceosome-associated protein 49

splicing factor 3B subunit 4

uncharacterized LOC102612062

uncharacterized LOC107816527

uncharacterized LOC107806640

organelle RRM domain-containing protein 6, chloroplastic-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	2
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2
hvu04141	Protein processing in endoplasmic reticulum	2
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	8
bdi04145	Phagosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	3
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	6
zma03040	Spliceosome	3
zma04141	Protein processing in endoplasmic reticulum	2
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04016	MAPK signaling pathway - plant	3
zma04070	Phosphatidylinositol signaling system	3
zma04075	Plant hormone signal transduction	3
zma04626	Plant-pathogen interaction	3
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma04120	Ubiquitin mediated proteolysis	3
zma04141	Protein processing in endoplasmic reticulum	2
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	4
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	4
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00510	N-Glycan biosynthesis	5
bna00513	Various types of N-glycan biosynthesis	5
bna04141	Protein processing in endoplasmic reticulum	5
bna03040	Spliceosome	2
bna00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00510	N-Glycan biosynthesis	3
bna00513	Various types of N-glycan biosynthesis	3
bna04141	Protein processing in endoplasmic reticulum	3
bna00270	Cysteine and methionine metabolism	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00564	Glycerophospholipid metabolism	3
sot00440	Phosphonate and phosphinate metabolism	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04016	MAPK signaling pathway - plant	2
cit04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	4
nta03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta03015	mRNA surveillance pathway	2
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	4
nta00450	Selenocompound metabolism	2
nta04146	Peroxisome	2
nta03040	Spliceosome	2
nta04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

123134273

123079955

123182104

123443116

123444750

100841208

104582652

107277261

4338860

100384862

103650933

100193321

110430206

826602

100803118

100784532

101258326

103838899

100252755

100244774

18108414

11408527

121216283

107959793

106359693

106439150

102602409

102612062

107816527

107806640

107777009

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 123071612 (tae-r.2 coexpression data)

Top 50 enrichment test to 123071612 (tae-r.2 coexpression data)


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	2	2	2	3	1	1	2	1	1	2	1	1	2	2	1	1	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123071612 (tae-r.2 coexpression data)

Top 50 enrichment test to 123071612 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**