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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123079978   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 tae-r.2   123071645   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 tae-r.2   123062802   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 hvu-r.1   123440589   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic-like 
 bdi-r.1   100833309   pentatricopeptide repeat-containing protein At3g46610 
 osa-u.5   4351990   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 zma-u.5   100275894   uncharacterized LOC100275894 
 sbi-r.1   8065559   pentatricopeptide repeat-containing protein At3g46610 
 ath-u.5   AT3G46610   Pentatricopeptide repeat (PPR-like) superfamily protein 
 ath-u.5   AT5G14350   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100805229   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 gma-u.5   100788016   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 sly-u.5   101255938   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 bra-r.6   103856073   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 vvi-u.5   100242401   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 ppo-u.5   7461314   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 mtr-u.5   120576927   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 ghi-r.1   107957096   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 ghi-r.1   107898489   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 bna-r.1   106418350   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic-like 
 bna-r.1   106381316   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 sot-r.1   102587961   pentatricopeptide repeat-containing protein At3g46610-like 
 cit-r.1   102623218   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 nta-r.1   107774773   uncharacterized LOC107774773 
 nta-r.1   107802646   uncharacterized LOC107802646 

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Top 50 coexpressed genes to 123079978 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123079978 (tae-r.2 coexpression data)

CoexMap"123079978"


taeLOC123079978 | Entrez gene ID : 123079978    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 1 1 1 2 2 1 1 1 1 1 2 2 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (16249 genes)  IEA  
Protein XP_044358757.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 1,  cyto_mito 1  (predict for XP_044358757.1)
Subcellular
localization
TargetP
chlo 9,  mito 3  (predict for XP_044358757.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123079978
tae-r.2
for
123071645
tae-r.2
for
123062802
hvu-r.1
for
123440589
bdi-r.1
for
100833309
osa-u.5
for
4351990
zma-u.5
for
100275894
sbi-r.1
for
8065559
ath-u.5
for
AT3G46610
ath-u.5
for
AT5G14350
gma-u.5
for
100805229
gma-u.5
for
100788016
sly-u.5
for
101255938
bra-r.6
for
103856073
vvi-u.5
for
100242401
ppo-u.5
for
7461314
mtr-u.5
for
120576927
ghi-r.1
for
107957096
ghi-r.1
for
107898489
bna-r.1
for
106418350
bna-r.1
for
106381316
sot-r.1
for
102587961
cit-r.1
for
102623218
nta-r.1
for
107774773
nta-r.1
for
107802646


Ortholog ID: 10130
Species tae tae tae hvu bdi osa zma sbi ath ath gma gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta
Symbol LOC123079978 LOC123071645 LOC123062802 LOC123440589 LOC100833309 LOC4351990 LOC100275894 LOC8065559 AT3G46610 AT5G14350 LOC100805229 LOC100788016 LOC101255938 LOC103856073 LOC100242401 LOC7461314 LOC120576927 LOC107957096 LOC107898489 LOC106418350 LOC106381316 LOC102587961 LOC102623218 LOC107774773 LOC107802646
Function* protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic-like pentatricopeptide repeat-containing protein At3g46610 protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic uncharacterized LOC100275894 pentatricopeptide repeat-containing protein At3g46610 Pentatricopeptide repeat (PPR-like) superfamily protein Pentatricopeptide repeat (PPR) superfamily protein protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic-like protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic pentatricopeptide repeat-containing protein At3g46610-like protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic uncharacterized LOC107774773 uncharacterized LOC107802646
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 7
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 4
tae00900 Terpenoid backbone biosynthesis 3
tae00620 Pyruvate metabolism 2
tae00710 Carbon fixation by Calvin cycle 2
tae01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 5
tae01200 Carbon metabolism 5
tae00860 Porphyrin metabolism 3
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00561 Glycerolipid metabolism 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123079978 123071645 123062802 123440589 100833309 4351990 100275894 8065559 823814 831286 100805229 100788016 101255938 103856073 100242401 7461314 120576927 107957096 107898489 106418350 106381316 102587961 102623218 107774773 107802646
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