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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123085105   uncharacterized LOC123085105 
 tae-r.2   123092892   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 tae-r.2   123098171   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 hvu-r.1   123449245   protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like 
 bdi-r.1   100840559   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 osa-u.5   4332154   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 zma-u.5   100275676   uncharacterized LOC100275676 
 sbi-r.1   8085251   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 ath-u.5   AT4G33780   ATP phosphoribosyltransferase regulatory subunit 
 ath-u.5   SHW1   short hypocotyl in white light1 
 gma-u.5   100785194   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 gma-u.5   100817442   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 gma-u.5   100784688   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 sly-u.5   101260181   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 sly-u.5   101257460   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 bra-r.6   103862302   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 bra-r.6   103831542   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 vvi-u.5   100251465   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 vvi-u.5   100243345   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 ppo-u.5   7478675   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 mtr-u.5   11408848   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 ghi-r.1   107886967   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 ghi-r.1   107899604   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 ghi-r.1   121222071   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 bna-r.1   BNAA03G50640D   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 bna-r.1   125590169   protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like 
 bna-r.1   106438555   protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like 
 sot-r.1   102605954   uncharacterized LOC102605954 
 sot-r.1   102596298   uncharacterized LOC102596298 
 cit-r.1   102627180   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 cit-r.1   102621139   protein SHORT HYPOCOTYL IN WHITE LIGHT 1 
 nta-r.1   107803764   uncharacterized LOC107803764 
 nta-r.1   107793754   uncharacterized LOC107793754 
 nta-r.1   107776742   uncharacterized LOC107776742 

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Top 50 coexpressed genes to 123085105 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123085105 (tae-r.2 coexpression data)

CoexMap"123085105"


taeLOC123085105 | Entrez gene ID : 123085105    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 1 1 1 2 3 2 2 2 1 1 3 3 2 2 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010100 [list] [network] negative regulation of photomorphogenesis  (3 genes)  IEA  
GO:0009787 [list] [network] regulation of abscisic acid-activated signaling pathway  (30 genes)  IEA  
GO CC
GO MF
Protein XP_044362625.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 1,  plas 1,  vacu 1,  pero 1,  mito_plas 1  (predict for XP_044362625.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_044362625.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123085105
tae-r.2
for
123092892
tae-r.2
for
123098171
hvu-r.1
for
123449245
bdi-r.1
for
100840559
osa-u.5
for
4332154
zma-u.5
for
100275676
sbi-r.1
for
8085251
ath-u.5
for
AT4G33780
ath-u.5
for
SHW1
gma-u.5
for
100785194
gma-u.5
for
100817442
gma-u.5
for
100784688
sly-u.5
for
101260181
sly-u.5
for
101257460
bra-r.6
for
103862302
bra-r.6
for
103831542
vvi-u.5
for
100251465
vvi-u.5
for
100243345
ppo-u.5
for
7478675
mtr-u.5
for
11408848
ghi-r.1
for
107886967
ghi-r.1
for
107899604
ghi-r.1
for
121222071
bna-r.1
for
BNAA03G50640D
bna-r.1
for
125590169
bna-r.1
for
106438555
sot-r.1
for
102605954
sot-r.1
for
102596298
cit-r.1
for
102627180
cit-r.1
for
102621139
nta-r.1
for
107803764
nta-r.1
for
107793754
nta-r.1
for
107776742


Ortholog ID: 4426
Species tae tae tae hvu bdi osa zma sbi ath ath gma gma gma sly sly bra bra vvi vvi ppo mtr ghi ghi ghi bna bna bna sot sot cit cit nta nta nta
Symbol LOC123085105 LOC123092892 LOC123098171 LOC123449245 LOC100840559 LOC4332154 LOC100275676 LOC8085251 AT4G33780 SHW1 LOC100785194 LOC100817442 LOC100784688 LOC101260181 LOC101257460 LOC103862302 LOC103831542 LOC100251465 LOC100243345 LOC7478675 LOC11408848 LOC107886967 LOC121222071 LOC107948971 LOC125590169 LOC106380947 LOC106375713 LOC102605954 LOC102596298 LOC102627180 LOC102621139 LOC107803764 LOC107793754 LOC107776742
Function* uncharacterized LOC123085105 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 uncharacterized LOC100275676 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 ATP phosphoribosyltransferase regulatory subunit short hypocotyl in white light1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like uncharacterized LOC106380947 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like uncharacterized LOC102605954 uncharacterized LOC102596298 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 uncharacterized LOC107803764 uncharacterized LOC107793754 uncharacterized LOC107776742
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00785 Lipoic acid metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03060 Protein export 2
bdi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03022 Basal transcription factors 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 3
ath00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 6
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 4
bra04120 Ubiquitin mediated proteolysis 4
bra04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 13
vvi00020 Citrate cycle (TCA cycle) 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 3
ghi00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 8
bna01240 Biosynthesis of cofactors 8
bna03010 Ribosome 6
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 3
cit01200 Carbon metabolism 3
cit00270 Cysteine and methionine metabolism 2
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00541 Biosynthesis of various nucleotide sugars 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123085105 123092892 123098171 123449245 100840559 4332154 100275676 8085251 829520 843330 100785194 100817442 100784688 101260181 101257460 103862302 103831542 100251465 100243345 7478675 11408848 107886967 121222071 107948971 125590169 106380947 106375713 102605954 102596298 102627180 102621139 107803764 107793754 107776742
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