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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123086824   cyclin-D5-1 
 tae-r.2   123044173   cyclin-D2-2 
 tae-r.2   123187919   cyclin-D2-2 
 hvu-r.1   123449393   cyclin-D5-3-like 
 hvu-r.1   123425263   cyclin-D2-2-like 
 hvu-r.1   123452775   cyclin-D5-2-like 
 bdi-r.1   100837020   cyclin-D2-2 
 bdi-r.1   100832008   cyclin-D5-3 
 osa-u.5   4331985   cyclin-D5-3-like 
 osa-u.5   4333455   cyclin-D5-1-like 
 zma-u.5   100283450   cyclin delta-2 
 zma-u.5   100283538   cyclin delta-2 
 zma-u.5   100501413   Cyclin-D5-1 
 sbi-r.1   8074298   cyclin-D5-2 
 sbi-r.1   8063725   cyclin-D4-1 
 ath-u.5   CYCD2;1   Cyclin D2;1 
 ath-u.5   CYCD1;1   CYCLIN D1;1 
 ath-u.5   CYCD3;2   CYCLIN D3;2 
 gma-u.5   100799683   cyclin-D4-1 
 gma-u.5   100795892   cyclin-D3-3 
 sly-u.5   cycd3c3   D-type cyclin-3 
 sly-u.5   101263411   cyclin-D1-1 
 bra-r.6   103834430   cyclin-D3-1 
 bra-r.6   103840923   cyclin-D3-3 
 vvi-u.5   100854424   cyclin-D5-1 
 vvi-u.5   100267897   cyclin-D3-3 
 ppo-u.5   7471482   cyclin-D1-1 
 ppo-u.5   7472682   cyclin-D3-1 
 mtr-u.5   11446144   cyclin-D4-2 
 mtr-u.5   11405645   cyclin-D1-1 
 ghi-r.1   107909628   cyclin-D1-1 
 ghi-r.1   107913282   cyclin-D5-1 
 ghi-r.1   107913300   cyclin-D1-1 
 bna-r.1   106394545   cyclin-D3-2 
 bna-r.1   106394758   cyclin-D1-1-like 
 bna-r.1   106402828   cyclin-D3-3 
 sot-r.1   102587746   cyclin-D2-1-like 
 cit-r.1   102621853   cyclin-D3-1 
 cit-r.1   102630732   cyclin-D4-1-like 
 cit-r.1   102628473   cyclin-D3-2 
 nta-r.1   107806001   cyclin-D1-1 
 nta-r.1   107782163   cyclin-D3-2 
 nta-r.1   107781602   cyclin-D3-3 
 cre-r.1   CHLRE_11g467772v5   uncharacterized protein 
 cre-r.1   CHLRE_06g289750v5   uncharacterized protein 
 cre-r.1   CHLRE_06g284350v5   uncharacterized protein 

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Top 50 coexpressed genes to 123086824 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123086824 (tae-r.2 coexpression data)

CoexMap"123086824"


taeLOC123086824 | Entrez gene ID : 123086824    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 3 2 2 3 2 3 2 2 2 2 2 2 3 3 1 3 3 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein XP_044364576.1 [sequence] [blastp]
XP_044364577.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  plas 1,  E.R._vacu 1,  cyto_pero 1  (predict for XP_044364576.1)
cyto 4,  E.R. 2,  E.R._plas 2,  plas 1,  cyto_nucl 1,  cyto_pero 1  (predict for XP_044364577.1)
Subcellular
localization
TargetP
other 8,  scret 3  (predict for XP_044364576.1)
other 8,  scret 3  (predict for XP_044364577.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123086824
tae-r.2
for
123044173
tae-r.2
for
123187919
hvu-r.1
for
123449393
hvu-r.1
for
123425263
hvu-r.1
for
123452775
bdi-r.1
for
100837020
bdi-r.1
for
100832008
osa-u.5
for
4331985
osa-u.5
for
4333455
zma-u.5
for
100283450
zma-u.5
for
100283538
zma-u.5
for
100501413
sbi-r.1
for
8074298
sbi-r.1
for
8063725
ath-u.5
for
CYCD2;1
ath-u.5
for
CYCD1;1
ath-u.5
for
CYCD3;2
gma-u.5
for
100799683
gma-u.5
for
100795892
sly-u.5
for
cycd3c3
sly-u.5
for
101263411
bra-r.6
for
103834430
bra-r.6
for
103840923
vvi-u.5
for
100854424
vvi-u.5
for
100267897
ppo-u.5
for
7471482
ppo-u.5
for
7472682
mtr-u.5
for
11446144
mtr-u.5
for
11405645
ghi-r.1
for
107909628
ghi-r.1
for
107913282
ghi-r.1
for
107913300
bna-r.1
for
106394545
bna-r.1
for
106394758
bna-r.1
for
106402828
sot-r.1
for
102587746
cit-r.1
for
102621853
cit-r.1
for
102630732
cit-r.1
for
102628473
nta-r.1
for
107806001
nta-r.1
for
107782163
nta-r.1
for
107781602
cre-r.1
for
CHLRE_11g467772v5
cre-r.1
for
CHLRE_06g289750v5
cre-r.1
for
CHLRE_06g284350v5


Ortholog ID: 67
Species tae tae hvu hvu hvu bdi bdi osa osa zma zma zma sbi sbi ath ath ath gma gma gma sly sly bra bra bra vvi vvi vvi ppo ppo mtr mtr ghi ghi ghi bna bna bna sot cit cit cit nta nta nta cre cre cre
Symbol LOC123052052 LOC123121432 LOC123449393 LOC123398931 LOC123451148 LOC100832008 LOC100841255 LOC4340499 LOC4346937 LOC103643161 LOC100273934 LOC103647502 LOC8074298 LOC8078902 CYCD1;1 CYCD4;1 CYCD3;3 LOC100798728 LOC100807175 LOC100804102 cycD3 LOC101248769 LOC103862565 LOC103864358 LOC103829523 LOC100247298 LOC104878152 LOC100255261 LOC7490056 LOC18104838 LOC11433995 LOC25489960 LOC107908885 LOC107899915 LOC107932943 LOC106402828 LOC106409485 LOC106417667 LOC102583812 LOC102630732 LOC102627697 LOC102606606 LOC107782163 LOC107776537 LOC107782437 CHLRE_11g467772v5 CHLRE_06g284350v5 CHLRE_09g414416v5
Function* cyclin-D2-2 cyclin-D2-1 cyclin-D5-3-like cyclin-D4-1-like cyclin-D5-1-like cyclin-D5-3 cyclin-D4-2 cyclin-D3-1-like cyclin-D2-1-like cyclin-D4-2-like uncharacterized LOC100273934 cyclin-D4-1 cyclin-D5-2 cyclin-D3-1 CYCLIN D1;1 CYCLIN D4;1 CYCLIN D3;3 cyclin-D5-1 cyclin-D3-3 cyclin-D3-1-like cyclin D3.1 cyclin-D2-1 cyclin-D5-1 cyclin-D2-1 cyclin-D3-2 cyclin-D4-2 uncharacterized LOC104878152 cyclin-D1-1 cyclin-D3-1 cyclin-D3-1 cyclin-D5-1 cyclin-D5-1 cyclin-D3-1 cyclin-D4-2 cyclin-D3-3 cyclin-D3-3 cyclin-D3-3 cyclin-D4-1-like cyclin-D3-3-like cyclin-D4-1-like cyclin-D2-2-like cyclin-D5-1 cyclin-D3-2 cyclin-D4-1-like cyclin-D4-1-like uncharacterized protein uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00460 Cyanoamino acid metabolism 3
tae00500 Starch and sucrose metabolism 3
tae00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 4
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 8
sbi03030 DNA replication 5
sbi04145 Phagosome 3
sbi03060 Protein export 3
sbi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03420 Nucleotide excision repair 3
ath03430 Mismatch repair 3
ath03440 Homologous recombination 3
ath03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04145 Phagosome 2
ath04517 IgSF CAM signaling 2
ath04814 Motor proteins 2
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00240 Pyrimidine metabolism 2
sly01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00010 Glycolysis / Gluconeogenesis 2
bra00500 Starch and sucrose metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00010 Glycolysis / Gluconeogenesis 2
vvi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00944 Flavone and flavonol biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 5
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
ghi04517 IgSF CAM signaling 2
ghi04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna00270 Cysteine and methionine metabolism 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 7
sot04075 Plant hormone signal transduction 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit01240 Biosynthesis of cofactors 2
cit01250 Biosynthesis of nucleotide sugars 2
cit00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00100 Steroid biosynthesis 5
nta04145 Phagosome 4
nta04517 IgSF CAM signaling 4
nta04814 Motor proteins 4
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00053 Ascorbate and aldarate metabolism 3
nta00520 Amino sugar and nucleotide sugar metabolism 3
nta01240 Biosynthesis of cofactors 3
nta01250 Biosynthesis of nucleotide sugars 3
nta00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00053 Ascorbate and aldarate metabolism 6
nta00520 Amino sugar and nucleotide sugar metabolism 6
nta01240 Biosynthesis of cofactors 6
nta01250 Biosynthesis of nucleotide sugars 6
nta00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03013 Nucleocytoplasmic transport 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123052052 123121432 123449393 123398931 123451148 100832008 100841255 4340499 4346937 103643161 100273934 103647502 8074298 8078902 843357 836667 824169 100798728 100807175 100804102 543748 101248769 103862565 103864358 103829523 100247298 104878152 100255261 7490056 18104838 11433995 25489960 107908885 107899915 107932943 106402828 106409485 106417667 102583812 102630732 102627697 102606606 107782163 107776537 107782437 5725073 5720978 5722348
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