ATTED-II : GeneCoexpression result

Species	Gene	Description
tae-r.2	123090614	TLC domain-containing protein 4
osa-u.5	4339138	uncharacterized LOC4339138
osa-u.5	4339284	uncharacterized LOC4339284
osa-u.5	4325505	uncharacterized LOC4325505
zma-u.5	100283418	transmembrane protein 56
zma-u.5	100194195	TRAM LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
zma-u.5	100279422	TRAM LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
ath-u.5	AT4G10360	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
ath-u.5	AT4G19645	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
ath-u.5	AT1G31300	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
gma-u.5	100777722	transmembrane protein 56-B-like
gma-u.5	100780614	transmembrane protein 56-B-like
sly-u.5	101251212	uncharacterized LOC101251212
sly-u.5	101246840	uncharacterized LOC101246840
sly-u.5	101247393	uncharacterized LOC101247393
vvi-u.5	100257514	uncharacterized LOC100257514
vvi-u.5	100251457	uncharacterized LOC100251457
vvi-u.5	100260460	uncharacterized LOC100260460
ppo-u.5	7457606	uncharacterized LOC7457606
ppo-u.5	7468721	uncharacterized LOC7468721
ppo-u.5	7498109	uncharacterized LOC7498109
mtr-u.5	25489178	TLC domain-containing protein 4-B
mtr-u.5	11436596	TLC domain-containing protein 4

Annotation

functional annotation

KEGG

GO BP

GO:0055088 [list] [network] lipid homeostasis

(143 genes)

IEA

GO CC

GO:0005783 [list] [network] endoplasmic reticulum	(1516 genes)	IEA
GO:0016020 [list] [network] membrane	(10843 genes)	IEA

GO MF

Protein

XP_044367867.1 [sequence] [blastp]
XP_044367868.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, chlo 1, plas 1, vacu 1, E.R. 1, pero 1, chlo_mito 1, nucl_plas 1, golg_plas 1, E.R._vacu 1, cysk_plas 1, mito_plas 1	(predict for XP_044367867.1)
cyto 5, chlo 1, plas 1, vacu 1, E.R. 1, pero 1, chlo_mito 1, nucl_plas 1, golg_plas 1, E.R._vacu 1, cysk_plas 1, mito_plas 1	(predict for XP_044367868.1)

Subcellular
localization
TargetP

other 6, mito 4	(predict for XP_044367867.1)
other 6, mito 4	(predict for XP_044367868.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123090614	osa-u.5 for 4339138	osa-u.5 for 4339284	osa-u.5 for 4325505	zma-u.5 for 100283418	zma-u.5 for 100194195	zma-u.5 for 100279422	ath-u.5 for AT4G10360	ath-u.5 for AT4G19645	ath-u.5 for AT1G31300	gma-u.5 for 100777722	gma-u.5 for 100780614	sly-u.5 for 101251212	sly-u.5 for 101246840	sly-u.5 for 101247393	vvi-u.5 for 100257514	vvi-u.5 for 100251457	vvi-u.5 for 100260460	ppo-u.5 for 7457606	ppo-u.5 for 7468721	ppo-u.5 for 7498109	mtr-u.5 for 25489178	mtr-u.5 for 11436596

Ortholog

Ortholog ID: 832

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

TLC domain-containing protein 4

TLC domain-containing protein 4-like

transmembrane protein 56

uncharacterized LOC4327490

uncharacterized LOC4339284

uncharacterized LOC100272920

transmembrane protein 56

transmembrane protein 56-B

TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein

transmembrane protein 56-B-like

uncharacterized LOC101246840

uncharacterized LOC101251212

uncharacterized LOC100251457

uncharacterized LOC100260460

uncharacterized LOC7457606

uncharacterized LOC18103883

TLC domain-containing protein 4-B

TLC domain-containing protein 4

TLC domain-containing protein 4-like

transmembrane protein 56-B-like

transmembrane protein 56-like

uncharacterized LOC102621731

uncharacterized LOC127901809

uncharacterized LOC107807499

uncharacterized LOC107762701

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00510	N-Glycan biosynthesis	3
tae00513	Various types of N-glycan biosynthesis	3
tae03050	Proteasome	3
tae00564	Glycerophospholipid metabolism	2
tae04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00020	Citrate cycle (TCA cycle)	3
osa01200	Carbon metabolism	3
osa01210	2-Oxocarboxylic acid metabolism	3
osa01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04130	SNARE interactions in vesicular transport	4
osa04120	Ubiquitin mediated proteolysis	2
osa04141	Protein processing in endoplasmic reticulum	2
osa04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04145	Phagosome	3
zma04517	IgSF CAM signaling	3
zma04148	Efferocytosis	2
zma04518	Integrin signaling	2
zma04620	Toll-like receptor signaling pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04145	Phagosome	2
zma04148	Efferocytosis	2
zma04517	IgSF CAM signaling	2
zma04518	Integrin signaling	2
zma04620	Toll-like receptor signaling pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	4
sbi00260	Glycine, serine and threonine metabolism	3
sbi00630	Glyoxylate and dicarboxylate metabolism	3
sbi00670	One carbon pool by folate	3
sbi00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00061	Fatty acid biosynthesis	3
sbi00071	Fatty acid degradation	3
sbi01212	Fatty acid metabolism	3
sbi04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00010	Glycolysis / Gluconeogenesis	2
ath00620	Pyruvate metabolism	2
ath01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	3
vvi03083	Polycomb repressive complex	2
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00670	One carbon pool by folate	3
ppo01230	Biosynthesis of amino acids	3
ppo00270	Cysteine and methionine metabolism	3
ppo01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	5
mtr04120	Ubiquitin mediated proteolysis	2
mtr04141	Protein processing in endoplasmic reticulum	2
mtr03250	Viral life cycle - HIV-1	2
mtr03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00280	Valine, leucine and isoleucine degradation	5
ghi00330	Arginine and proline metabolism	3
ghi00640	Propanoate metabolism	3
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ghi00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	5
nta00290	Valine, leucine and isoleucine biosynthesis	2
nta00620	Pyruvate metabolism	2
nta01210	2-Oxocarboxylic acid metabolism	2
nta01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	3
nta00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00900	Terpenoid backbone biosynthesis	2
cre01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

123182605

123444509

100838233

100839605

4327490

4339284

100272920

100283418

8057182

8085391

826628

827707

100780614

101246840

101251212

100251457

100260460

7457606

18103883

25489178

11436596

107911728

107958321

106440452

106385427

102588812

102601141

102621731

127901809

107807499

107762701

5729270

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 123090614 (tae-r.2 coexpression data)

Top 50 enrichment test to 123090614 (tae-r.2 coexpression data)


Species	tae	osa	zma	ath	gma	sly	vvi	ppo	mtr	hvu	cit	bra	ghi	sbi	bdi	nta	bna	cre	sot
Paralog	1	3	3	3	2	3	3	3	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123090614 (tae-r.2 coexpression data)

Top 50 enrichment test to 123090614 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**