ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123093267	uncharacterized LOC123093267
tae-r.2	123098539	uncharacterized LOC123098539
tae-r.2	123121300	inactive ubiquitin carboxyl-terminal hydrolase 54
tae-r.2	123084815	uncharacterized LOC123084815
hvu-r.1	123449531	uncharacterized LOC123449531
bdi-r.1	100846067	uncharacterized LOC100846067
osa-u.5	4331732	uncharacterized LOC4331732
zma-u.5	100194097	uncharacterized LOC100194097
zma-u.5	100274180	Ubiquitin carboxyl-terminal hydrolase-related protein
sbi-r.1	8059839	uncharacterized LOC8059839
ath-u.5	AT3G47890	Ubiquitin carboxyl-terminal hydrolase-related protein
ath-u.5	AT3G47910	Ubiquitin carboxyl-terminal hydrolase-related protein
gma-u.5	100800030	uncharacterized LOC100800030
gma-u.5	100799759	uncharacterized LOC100799759
sly-u.5	101250879	uncharacterized LOC101250879
sly-u.5	101248307	uncharacterized LOC101248307
bra-r.6	103873186	uncharacterized LOC103873186
bra-r.6	103873189	uncharacterized LOC103873189
vvi-u.5	100256959	uncharacterized LOC100256959
ppo-u.5	18105820	uncharacterized LOC18105820
ppo-u.5	7484760	uncharacterized LOC7484760
mtr-u.5	25493801	uncharacterized LOC25493801
ghi-r.1	121209611	uncharacterized LOC121209611
ghi-r.1	107912155	uncharacterized LOC107912155
ghi-r.1	107950099	uncharacterized LOC107950099
bna-r.1	106452474	uncharacterized LOC106452474
bna-r.1	106408583	uncharacterized LOC106408583
bna-r.1	106389548	uncharacterized LOC106389548
sot-r.1	102605106	uncharacterized LOC102605106
sot-r.1	102592123	uncharacterized LOC102592123
cit-r.1	102612465	uncharacterized LOC102612465
nta-r.1	107828603	uncharacterized LOC107828603
nta-r.1	107803228	uncharacterized LOC107803228
nta-r.1	107796036	uncharacterized LOC107796036
cre-r.1	CHLRE_12g508250v5	uncharacterized protein

Top 50 coexpressed genes to 123093267 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123093267 (tae-r.2 coexpression data)

CoexMap"123093267"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0016579 [list] [network] protein deubiquitination

(280 genes)

IEA

GO CC

GO MF

GO:0004843 [list] [network] cysteine-type deubiquitinase activity	(249 genes)	IEA
GO:0005515 [list] [network] protein binding	(16249 genes)	IEA

Protein

XP_044371119.1 [sequence] [blastp]
XP_044371120.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, chlo 1, mito 1, cysk 1	(predict for XP_044371119.1)
nucl 7, chlo 1, mito 1, cysk 1	(predict for XP_044371120.1)

Subcellular
localization
TargetP

mito 3, other 3	(predict for XP_044371119.1)
mito 3, other 3	(predict for XP_044371120.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123093267	tae-r.2 for 123098539	tae-r.2 for 123121300	tae-r.2 for 123084815	hvu-r.1 for 123449531	bdi-r.1 for 100846067	osa-u.5 for 4331732	zma-u.5 for 100194097	zma-u.5 for 100274180	sbi-r.1 for 8059839	ath-u.5 for AT3G47890	ath-u.5 for AT3G47910	gma-u.5 for 100800030	gma-u.5 for 100799759	sly-u.5 for 101250879	sly-u.5 for 101248307	bra-r.6 for 103873186	bra-r.6 for 103873189	vvi-u.5 for 100256959	ppo-u.5 for 18105820	ppo-u.5 for 7484760	mtr-u.5 for 25493801	ghi-r.1 for 121209611	ghi-r.1 for 107912155	ghi-r.1 for 107950099	bna-r.1 for 106452474	bna-r.1 for 106408583	bna-r.1 for 106389548	sot-r.1 for 102605106	sot-r.1 for 102592123	cit-r.1 for 102612465	nta-r.1 for 107828603	nta-r.1 for 107803228	nta-r.1 for 107796036	cre-r.1 for CHLRE_12g508250v5

Ortholog

Ortholog ID: 4574

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

uncharacterized LOC123093267

inactive ubiquitin carboxyl-terminal hydrolase 54

uncharacterized LOC123084815

uncharacterized LOC123449531

uncharacterized LOC100846067

uncharacterized LOC4331732

uncharacterized LOC100194097

Ubiquitin carboxyl-terminal hydrolase-related protein

uncharacterized LOC8059839

Ubiquitin carboxyl-terminal hydrolase-related protein

uncharacterized LOC100800030

uncharacterized LOC100799759

uncharacterized LOC101250879

uncharacterized LOC101248307

uncharacterized LOC103873186

uncharacterized LOC103873189

uncharacterized LOC18105820

uncharacterized LOC7484760

uncharacterized LOC25493801

uncharacterized LOC121209611

uncharacterized LOC107912155

uncharacterized LOC107950099

uncharacterized LOC106408583

uncharacterized LOC106389548

uncharacterized LOC106410298

uncharacterized LOC102605106

uncharacterized LOC102592123

uncharacterized LOC102612465

uncharacterized LOC107803228

uncharacterized LOC107796036

uncharacterized LOC107764486

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	2
tae04518	Integrin signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	2
tae04518	Integrin signaling	2
tae03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi03083	Polycomb repressive complex	2
bdi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	3
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	2
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	3
sly03083	Polycomb repressive complex	2
sly03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	5
ppo00562	Inositol phosphate metabolism	2
ppo04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00562	Inositol phosphate metabolism	2
ppo04070	Phosphatidylinositol signaling system	2
ppo00250	Alanine, aspartate and glutamate metabolism	2
ppo00910	Nitrogen metabolism	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	3
mtr00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00310	Lysine degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00310	Lysine degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00310	Lysine degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00562	Inositol phosphate metabolism	2
bna04070	Phosphatidylinositol signaling system	2
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00562	Inositol phosphate metabolism	2
bna04070	Phosphatidylinositol signaling system	2
bna04144	Endocytosis	2
bna03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00310	Lysine degradation	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00310	Lysine degradation	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	8
cre03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

123093267

123121300

123084815

123449531

100846067

4331732

100194097

100274180

8059839

823944

823946

100800030

100799759

101250879

101248307

103873186

103873189

18105820

7484760

25493801

121209611

107912155

107950099

106408583

106389548

106410298

102605106

102592123

102612465

107803228

107796036

107764486

5716517

The preparation time of this page was 0.6 [sec].


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	1	1	1	2	1	2	2	2	2	1	2	1	3	3	2	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123093267 (tae-r.2 coexpression data)

Top 50 enrichment test to 123093267 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**