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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123095601   CCR4-NOT transcription complex subunit 3 
 tae-r.2   123090560   general negative regulator of transcription subunit 3 
 tae-r.2   123087373   CCR4-NOT transcription complex subunit 3 
 hvu-r.1   123446909   general negative regulator of transcription subunit 3 
 bdi-r.1   100823027   general negative regulator of transcription subunit 3 
 osa-u.5   4333598   uncharacterized LOC4333598 
 zma-u.5   103643788   CCR4-NOT transcription complex subunit 3 
 zma-u.5   100193927   uncharacterized LOC100193927 
 sbi-r.1   110430397   general negative regulator of transcription subunit 3 
 ath-u.5   AT5G18230   transcription regulator NOT2/NOT3/NOT5 family protein 
 gma-u.5   100785965   general negative regulator of transcription subunit 3 
 gma-u.5   100783415   CCR4-NOT transcription complex subunit 3 
 gma-u.5   100780204   CCR4-NOT transcription complex subunit 3 
 sly-u.5   101245924   uncharacterized LOC101245924 
 bra-r.6   103845854   general negative regulator of transcription subunit 3 
 bra-r.6   103856292   CCR4-NOT transcription complex subunit 3 
 bra-r.6   103856293   CCR4-NOT transcription complex subunit 3 
 vvi-u.5   100253711   uncharacterized LOC100253711 
 ppo-u.5   7469871   uncharacterized LOC7469871 
 ppo-u.5   7482356   general negative regulator of transcription subunit 3 
 mtr-u.5   11437872   CCR4-NOT transcription complex subunit 3 
 ghi-r.1   107933858   CCR4-NOT transcription complex subunit 3 
 ghi-r.1   107920023   general negative regulator of transcription subunit 3 
 ghi-r.1   107893651   CCR4-NOT transcription complex subunit 3 
 bna-r.1   106433776   CCR4-NOT transcription complex subunit 3-like 
 bna-r.1   106433726   CCR4-NOT transcription complex subunit 3 
 bna-r.1   106386554   general negative regulator of transcription subunit 3-like 
 sot-r.1   102595437   general negative regulator of transcription subunit 3 
 cit-r.1   102613279   general negative regulator of transcription subunit 3 
 nta-r.1   107822861   uncharacterized LOC107822861 
 nta-r.1   107822036   uncharacterized LOC107822036 
 cre-r.1   CHLRE_04g227350v5   uncharacterized protein 

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Top 50 coexpressed genes to 123095601 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123095601 (tae-r.2 coexpression data)

CoexMap"123095601"


taeLOC123095601 | Entrez gene ID : 123095601    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 1 2 1 1 3 1 3 1 2 1 3 3 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes03018 [list] [network] RNA degradation (374 genes)
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (5253 genes)  IEA  
GO CC
GO:0030015 [list] [network] CCR4-NOT core complex  (21 genes)  IEA  
GO:0005634 [list] [network] nucleus  (8281 genes)  IEA  
GO MF
Protein XP_044373055.1 [sequence] [blastp]
XP_044373056.1 [sequence] [blastp]
XP_044373057.1 [sequence] [blastp]
XP_044373058.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 4,  chlo 1,  cysk 1  (predict for XP_044373055.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_044373056.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_044373057.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_044373058.1)
Subcellular
localization
TargetP
other 8  (predict for XP_044373055.1)
other 8  (predict for XP_044373056.1)
other 8  (predict for XP_044373057.1)
other 8  (predict for XP_044373058.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123095601
tae-r.2
for
123090560
tae-r.2
for
123087373
hvu-r.1
for
123446909
bdi-r.1
for
100823027
osa-u.5
for
4333598
zma-u.5
for
103643788
zma-u.5
for
100193927
sbi-r.1
for
110430397
ath-u.5
for
AT5G18230
gma-u.5
for
100785965
gma-u.5
for
100783415
gma-u.5
for
100780204
sly-u.5
for
101245924
bra-r.6
for
103845854
bra-r.6
for
103856292
bra-r.6
for
103856293
vvi-u.5
for
100253711
ppo-u.5
for
7469871
ppo-u.5
for
7482356
mtr-u.5
for
11437872
ghi-r.1
for
107933858
ghi-r.1
for
107920023
ghi-r.1
for
107893651
bna-r.1
for
106433776
bna-r.1
for
106433726
bna-r.1
for
106386554
sot-r.1
for
102595437
cit-r.1
for
102613279
nta-r.1
for
107822861
nta-r.1
for
107822036
cre-r.1
for
CHLRE_04g227350v5


Ortholog ID: 5837
Species tae tae tae hvu bdi osa zma zma sbi ath gma gma gma sly bra bra bra vvi ppo ppo mtr ghi ghi ghi bna bna bna sot cit nta nta cre
Symbol LOC123095601 LOC123090560 LOC123087373 LOC123446909 LOC100823027 LOC4333598 LOC103643788 LOC100193927 LOC110430397 AT5G18230 LOC100785965 LOC100783415 LOC100819202 LOC101245924 LOC103845854 LOC103856292 LOC103856293 LOC100253711 LOC7469871 LOC7482356 LOC11437872 LOC107933858 LOC107920023 LOC107893651 LOC106386554 LOC106387776 LOC106391346 LOC102595437 LOC102613279 LOC107822861 LOC107822036 CHLRE_04g227350v5
Function* CCR4-NOT transcription complex subunit 3 general negative regulator of transcription subunit 3 CCR4-NOT transcription complex subunit 3 general negative regulator of transcription subunit 3 general negative regulator of transcription subunit 3 uncharacterized LOC4333598 CCR4-NOT transcription complex subunit 3 uncharacterized LOC100193927 general negative regulator of transcription subunit 3 transcription regulator NOT2/NOT3/NOT5 family protein general negative regulator of transcription subunit 3 CCR4-NOT transcription complex subunit 3 general negative regulator of transcription subunit 3 uncharacterized LOC101245924 general negative regulator of transcription subunit 3 CCR4-NOT transcription complex subunit 3 CCR4-NOT transcription complex subunit 3 uncharacterized LOC100253711 uncharacterized LOC7469871 general negative regulator of transcription subunit 3 CCR4-NOT transcription complex subunit 3 CCR4-NOT transcription complex subunit 3 general negative regulator of transcription subunit 3 CCR4-NOT transcription complex subunit 3 general negative regulator of transcription subunit 3-like CCR4-NOT transcription complex subunit 3 CCR4-NOT transcription complex subunit 3 general negative regulator of transcription subunit 3 general negative regulator of transcription subunit 3 uncharacterized LOC107822861 uncharacterized LOC107822036 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 6
tae03018 RNA degradation 4
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 8
hvu04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 4
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 4
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03082 ATP-dependent chromatin remodeling 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03018 RNA degradation 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 4
gma03018 RNA degradation 3
gma00020 Citrate cycle (TCA cycle) 2
gma00785 Lipoic acid metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 6
gma03018 RNA degradation 2
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 5
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04142 Lysosome 5
bra03018 RNA degradation 2
bra04144 Endocytosis 2
bra05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
ppo04142 Lysosome 2
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 3
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
mtr04120 Ubiquitin mediated proteolysis 2
mtr00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
nta04142 Lysosome 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 4
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
nta03018 RNA degradation 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04130 SNARE interactions in vesicular transport 2
cre04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123095601 123090560 123087373 123446909 100823027 4333598 103643788 100193927 110430397 831941 100785965 100783415 100819202 101245924 103845854 103856292 103856293 100253711 7469871 7482356 11437872 107933858 107920023 107893651 106386554 106387776 106391346 102595437 102613279 107822861 107822036 5717919
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