ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123095993	RNA cytosine-C(5)-methyltransferase NSUN2
tae-r.2	123104052	RNA cytosine C(5)-methyltransferase NSUN2
tae-r.2	123086996	RNA cytosine-C(5)-methyltransferase NSUN2
tae-r.2	123121800	RNA cytosine-C(5)-methyltransferase NSUN2
hvu-r.1	123399035	RNA cytosine C(5)-methyltransferase NSUN2
hvu-r.1	123447663	RNA cytosine-C(5)-methyltransferase NSUN2-like
bdi-r.1	100833836	tRNA (cytosine(34)-C(5))-methyltransferase
bdi-r.1	100841242	tRNA (cytosine(34)-C(5))-methyltransferase
osa-u.5	4345871	uncharacterized LOC4345871
osa-u.5	4347343	uncharacterized LOC4347343
zma-u.5	100272508	uncharacterized LOC100272508
zma-u.5	103641349	RNA cytosine-C(5)-methyltransferase NSUN2
sbi-r.1	8067041	tRNA (cytosine(34)-C(5))-methyltransferase
sbi-r.1	8063738	tRNA (cytosine(34)-C(5))-methyltransferase
ath-u.5	AT2G22400	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
ath-u.5	AT4G40000	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
gma-u.5	100808859	RNA cytosine-C(5)-methyltransferase NSUN2
gma-u.5	100808598	RNA cytosine-C(5)-methyltransferase NSUN2
sly-u.5	101259902	uncharacterized LOC101259902
sly-u.5	101256287	uncharacterized LOC101256287
bra-r.6	103837897	RNA cytosine-C(5)-methyltransferase NSUN2
bra-r.6	103854554	RNA cytosine-C(5)-methyltransferase NSUN2
vvi-u.5	100247473	uncharacterized LOC100247473
ppo-u.5	7490197	uncharacterized LOC7490197
mtr-u.5	11422681	RNA cytosine-C(5)-methyltransferase NSUN2
mtr-u.5	25501876	RNA cytosine-C(5)-methyltransferase NSUN2
ghi-r.1	107951730	RNA cytosine-C(5)-methyltransferase NSUN2
ghi-r.1	107950435	RNA cytosine-C(5)-methyltransferase NSUN2
bna-r.1	106406275	RNA cytosine-C(5)-methyltransferase NSUN2-like
bna-r.1	106415936	RNA cytosine-C(5)-methyltransferase NSUN2
bna-r.1	106446409	RNA cytosine-C(5)-methyltransferase NSUN2
sot-r.1	102590670	tRNA (cytosine(34)-C(5))-methyltransferase
sot-r.1	102597730	tRNA (cytosine(34)-C(5))-methyltransferase-like
sot-r.1	102595102	uncharacterized LOC102595102
cit-r.1	102621904	uncharacterized LOC102621904
nta-r.1	107766522	uncharacterized LOC107766522
nta-r.1	107802160	uncharacterized LOC107802160
nta-r.1	107808849	uncharacterized LOC107808849
cre-r.1	CHLRE_03g179860v5	uncharacterized protein

Top 50 coexpressed genes to 123095993 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123095993 (tae-r.2 coexpression data)

CoexMap"123095993"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0001510 [list] [network] RNA methylation

(203 genes)

IEA

GO CC

GO MF

GO:0016428 [list] [network] tRNA (cytidine-5-)-methyltransferase activity	(6 genes)	IEA
GO:0003723 [list] [network] RNA binding	(4004 genes)	IEA

Protein

XP_044373509.1 [sequence] [blastp]
XP_044373510.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9	(predict for XP_044373509.1)
nucl 7, cyto 1, chlo 1, vacu 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_044373510.1)

Subcellular
localization
TargetP

chlo 8, mito 5	(predict for XP_044373509.1)
other 7	(predict for XP_044373510.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123095993	tae-r.2 for 123104052	tae-r.2 for 123086996	tae-r.2 for 123121800	hvu-r.1 for 123399035	hvu-r.1 for 123447663	bdi-r.1 for 100833836	bdi-r.1 for 100841242	osa-u.5 for 4345871	osa-u.5 for 4347343	zma-u.5 for 100272508	zma-u.5 for 103641349	sbi-r.1 for 8067041	sbi-r.1 for 8063738	ath-u.5 for AT2G22400	ath-u.5 for AT4G40000	gma-u.5 for 100808859	gma-u.5 for 100808598	sly-u.5 for 101259902	sly-u.5 for 101256287	bra-r.6 for 103837897	bra-r.6 for 103854554	vvi-u.5 for 100247473	ppo-u.5 for 7490197	mtr-u.5 for 11422681	mtr-u.5 for 25501876	ghi-r.1 for 107951730	ghi-r.1 for 107950435	bna-r.1 for 106406275	bna-r.1 for 106415936	bna-r.1 for 106446409	sot-r.1 for 102590670	sot-r.1 for 102597730	sot-r.1 for 102595102	cit-r.1 for 102621904	nta-r.1 for 107766522	nta-r.1 for 107802160	nta-r.1 for 107808849	cre-r.1 for CHLRE_03g179860v5

Ortholog

Ortholog ID: 3654

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

RNA cytosine C(5)-methyltransferase NSUN2

RNA cytosine-C(5)-methyltransferase NSUN2

RNA cytosine C(5)-methyltransferase NSUN2

RNA cytosine-C(5)-methyltransferase NSUN2-like

tRNA (cytosine(34)-C(5))-methyltransferase

uncharacterized LOC4345871

uncharacterized LOC4347343

uncharacterized LOC100272508

RNA cytosine-C(5)-methyltransferase NSUN2

tRNA (cytosine(34)-C(5))-methyltransferase

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

RNA cytosine-C(5)-methyltransferase NSUN2

uncharacterized LOC101259902

uncharacterized LOC101256287

RNA cytosine-C(5)-methyltransferase NSUN2

uncharacterized LOC100247473

uncharacterized LOC7490197

RNA cytosine-C(5)-methyltransferase NSUN2

tRNA (cytosine(34)-C(5))-methyltransferase

tRNA (cytosine(34)-C(5))-methyltransferase-like

uncharacterized LOC102595102

uncharacterized LOC102621904

uncharacterized LOC107802160

uncharacterized LOC107808849

uncharacterized LOC107822797

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3
tae00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00540	Lipopolysaccharide biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6
tae03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00500	Starch and sucrose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01230	Biosynthesis of amino acids	5
osa00290	Valine, leucine and isoleucine biosynthesis	2
osa01210	2-Oxocarboxylic acid metabolism	2
osa00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	7
osa00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00970	Aminoacyl-tRNA biosynthesis	2
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	3
gma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	5
sly00970	Aminoacyl-tRNA biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5
bra03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00970	Aminoacyl-tRNA biosynthesis	3
vvi03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	5
mtr03440	Homologous recombination	2
mtr03460	Fanconi anemia pathway	2
mtr03020	RNA polymerase	2
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3
mtr03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01230	Biosynthesis of amino acids	10
ghi00220	Arginine biosynthesis	4
ghi00300	Lysine biosynthesis	3
ghi00470	D-Amino acid metabolism	3
ghi03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01230	Biosynthesis of amino acids	8
ghi00220	Arginine biosynthesis	4
ghi00260	Glycine, serine and threonine metabolism	3
ghi00460	Cyanoamino acid metabolism	3
ghi00630	Glyoxylate and dicarboxylate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	3
sot03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	6
nta03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	5

Expression

Expression pattern

Entrez Gene ID^*

123104052

123090971

123112276

123399035

123447663

100833836

100841242

4345871

4347343

100272508

103641349

8067041

8063738

816771

830161

100808859

100808598

101259902

101256287

103837897

103854554

100247473

7490197

11422681

25501876

107951730

107950435

106415936

106446409

106363702

102590670

102597730

102595102

102621904

107802160

107808849

107822797

5728798

The preparation time of this page was 0.1 [sec].


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	2	2	2	2	2	2	2	2	2	1	1	2	2	3	3	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123095993 (tae-r.2 coexpression data)

Top 50 enrichment test to 123095993 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**