ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123074995	cis-prenyltransferase 4, chloroplastic
tae-r.2	123058803	cis-prenyltransferase 4, chloroplastic
hvu-r.1	123447616	cis-prenyltransferase 4, chloroplastic-like
hvu-r.1	123444854	cis-prenyltransferase 4, chloroplastic-like
bdi-r.1	100830201	isoprenyl transferase
osa-u.5	4324755	cis-prenyltransferase 4, chloroplastic
zma-u.5	100285459	undecaprenyl pyrophosphate synthetase
zma-u.5	100284572	undecaprenyl pyrophosphate synthetase
zma-u.5	100283522	undecaprenyl pyrophosphate synthetase
sbi-r.1	8058935	isoprenyl transferase
ath-u.5	cPT4	Undecaprenyl pyrophosphate synthetase family protein
ath-u.5	AT5G58784	Undecaprenyl pyrophosphate synthetase family protein
gma-u.5	100815256	dehydrodolichyl diphosphate synthase 2
gma-u.5	100789922	dehydrodolichyl diphosphate synthase 2
gma-u.5	100801810	dehydrodolichyl diphosphate synthase 2
sly-u.5	101249721	dehydrodolichyl diphosphate synthase CPT5, chloroplastic
sly-u.5	CPT4	cis-prenyltransferase 4
sly-u.5	CPT7	dehydrodolichyl diphosphate synthase 2
bra-r.6	103851624	dehydrodolichyl diphosphate synthase 2
vvi-u.5	100244987	cis-prenyltransferase 4, chloroplastic
ppo-u.5	7468564	dehydrodolichyl diphosphate synthase 2
mtr-u.5	11410618	dehydrodolichyl diphosphate synthase 2
ghi-r.1	107891622	dehydrodolichyl diphosphate synthase 2
ghi-r.1	107890967	cis-prenyltransferase 4, chloroplastic
ghi-r.1	121220854	dehydrodolichyl diphosphate synthase 2
bna-r.1	111212069	dehydrodolichyl diphosphate synthase 5-like
sot-r.1	102581796	dehydrodolichyl diphosphate synthase 2-like
sot-r.1	102581469	dehydrodolichyl diphosphate synthase 2-like
sot-r.1	102581136	dehydrodolichyl diphosphate synthase 2-like
cit-r.1	102628547	cis-prenyltransferase 4, chloroplastic-like
nta-r.1	107810503	cis-prenyltransferase 4, chloroplastic
nta-r.1	107805010	cis-prenyltransferase 4, chloroplastic-like
nta-r.1	107773583	dehydrodolichyl diphosphate synthase 2
cre-r.1	CHLRE_17g738250v5	uncharacterized protein

Top 50 coexpressed genes to 123074995 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123074995 (tae-r.2 coexpression data)

CoexMap"123101815"

[Cytoscape]

Annotation

functional annotation

KEGG

taes00900 [list] [network] Terpenoid backbone biosynthesis (187 genes)

GO BP

GO:0016094 [list] [network] polyprenol biosynthetic process

(15 genes)

IEA

GO CC

GO MF

GO:0045547 [list] [network] ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity

(19 genes)

IEA

Protein

XP_044379031.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 4, nucl 4, cyto 1

(predict for XP_044379031.1)

Subcellular
localization
TargetP

other 8

(predict for XP_044379031.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123074995	tae-r.2 for 123058803	hvu-r.1 for 123447616	hvu-r.1 for 123444854	bdi-r.1 for 100830201	osa-u.5 for 4324755	zma-u.5 for 100285459	zma-u.5 for 100284572	zma-u.5 for 100283522	sbi-r.1 for 8058935	ath-u.5 for cPT4	ath-u.5 for AT5G58784	gma-u.5 for 100815256	gma-u.5 for 100789922	gma-u.5 for 100801810	sly-u.5 for 101249721	sly-u.5 for CPT4	sly-u.5 for CPT7	bra-r.6 for 103851624	vvi-u.5 for 100244987	ppo-u.5 for 7468564	mtr-u.5 for 11410618	ghi-r.1 for 107891622	ghi-r.1 for 107890967	ghi-r.1 for 121220854	bna-r.1 for 111212069	sot-r.1 for 102581796	sot-r.1 for 102581469	sot-r.1 for 102581136	cit-r.1 for 102628547	nta-r.1 for 107810503	nta-r.1 for 107805010	nta-r.1 for 107773583	cre-r.1 for CHLRE_17g738250v5

Ortholog

Ortholog ID: 1680

Species

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

cPT4

CPT4

CPT7

Function^*

cis-prenyltransferase 4, chloroplastic-like

isoprenyl transferase

cis-prenyltransferase 4, chloroplastic

undecaprenyl pyrophosphate synthetase

isoprenyl transferase

isoprenyl transferase 2

Undecaprenyl pyrophosphate synthetase family protein

dehydrodolichyl diphosphate synthase 2

dehydrodolichyl diphosphate synthase CPT5, chloroplastic

cis-prenyltransferase 4

dehydrodolichyl diphosphate synthase 2

cis-prenyltransferase 4, chloroplastic

dehydrodolichyl diphosphate synthase 2

cis-prenyltransferase 4, chloroplastic

dehydrodolichyl diphosphate synthase 5-like

dehydrodolichyl diphosphate synthase 2-like

dimethylallylcistransferase, chloroplastic-like

cis-prenyltransferase 4, chloroplastic-like

dehydrodolichyl diphosphate synthase 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00910	Nitrogen metabolism	2
hvu01310	Nitrogen cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00900	Terpenoid backbone biosynthesis	2
zma02010	ABC transporters	2
zma04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2
sbi00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00900	Terpenoid backbone biosynthesis	3
ath04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00350	Tyrosine metabolism	2
sly01240	Biosynthesis of cofactors	2
sly00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04146	Peroxisome	3
sly00073	Cutin, suberine and wax biosynthesis	2
sly00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00592	alpha-Linolenic acid metabolism	4
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00710	Carbon fixation by Calvin cycle	5
mtr01200	Carbon metabolism	5
mtr00010	Glycolysis / Gluconeogenesis	4
mtr00030	Pentose phosphate pathway	4
mtr00051	Fructose and mannose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00196	Photosynthesis - antenna proteins	5
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	4
bna03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	2
sot00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00230	Purine metabolism	4
nta00250	Alanine, aspartate and glutamate metabolism	4
nta01232	Nucleotide metabolism	4
nta01240	Biosynthesis of cofactors	4
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	2

Expression

Expression pattern

Entrez Gene ID^*

123447616

123444854

100830201

4324755

100285459

100284572

100283522

8058935

8061664

835991

835994

100815256

100789922

100801810

101249721

101244138

101256886

103851624

100244987

7468564

11410618

107891622

107890967

107889771

111212069

102581796

102584404

102597403

102628547

107805010

107773583

5725180

The preparation time of this page was 0.4 [sec].


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	2	1	1	3	1	2	3	3	1	1	1	1	3	1	3	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123074995 (tae-r.2 coexpression data)

Top 50 enrichment test to 123074995 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**