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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123102016   ATP-dependent RNA helicase DEAH12, chloroplastic 
 tae-r.2   123119142   ATP-dependent RNA helicase DEAH12, chloroplastic 
 tae-r.2   123110131   ATP-dependent RNA helicase DEAH12, chloroplastic 
 hvu-r.1   123395390   ATP-dependent RNA helicase DEAH12, chloroplastic 
 bdi-r.1   100826894   ATP-dependent RNA helicase DEAH12, chloroplastic 
 osa-u.5   4352863   ATP-dependent RNA helicase DEAH12, chloroplastic 
 zma-u.5   100281540   uncharacterized LOC100281540 
 sbi-r.1   8065234   ATP-dependent RNA helicase DEAH12, chloroplastic 
 ath-u.5   AT4G19670   RING/U-box superfamily protein 
 gma-u.5   RTRP3   reverse transcriptase-like domain-containing RBR protein 
 gma-u.5   RTRP4   reverse transcriptase-like domain-containing RBR protein 
 sly-u.5   101249984   E3 ubiquitin-protein ligase RSL1 
 bra-r.6   103857672   E3 ubiquitin-protein ligase arih1 
 vvi-u.5   100263135   E3 ubiquitin-protein ligase RSL1 
 ppo-u.5   18103891   E3 ubiquitin-protein ligase RSL1 
 ppo-u.5   7481780   E3 ubiquitin-protein ligase RSL1 
 mtr-u.5   11414406   E3 ubiquitin-protein ligase dbl4 
 ghi-r.1   107906003   E3 ubiquitin-protein ligase RNF216 
 ghi-r.1   107958316   E3 ubiquitin-protein ligase RNF216 
 bna-r.1   106365917   E3 ubiquitin-protein ligase ARIH1 
 bna-r.1   106437714   E3 ubiquitin-protein ligase RSL1 
 cit-r.1   102618748   E3 ubiquitin-protein ligase RSL1 
 nta-r.1   107789029   E3 ubiquitin-protein ligase RSL1 
 nta-r.1   107791118   E3 ubiquitin-protein ligase RSL1 

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Top 50 coexpressed genes to 123102016 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123102016 (tae-r.2 coexpression data)

CoexMap"123102016"


taeLOC123102016 | Entrez gene ID : 123102016    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna cit nta sot cre
Paralog 3 1 1 1 1 1 1 2 1 1 1 2 1 2 2 1 2 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016567 [list] [network] protein ubiquitination  (1642 genes)  IEA  
GO CC
GO MF
GO:0004523 [list] [network] RNA-DNA hybrid ribonuclease activity  (89 genes)  IEA  
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (1191 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (2838 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (11810 genes)  IEA  
Protein XP_044379205.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  vacu 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_044379205.1)
Subcellular
localization
TargetP
other 8  (predict for XP_044379205.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123102016
tae-r.2
for
123119142
tae-r.2
for
123110131
hvu-r.1
for
123395390
bdi-r.1
for
100826894
osa-u.5
for
4352863
zma-u.5
for
100281540
sbi-r.1
for
8065234
ath-u.5
for
AT4G19670
gma-u.5
for
RTRP3
gma-u.5
for
RTRP4
sly-u.5
for
101249984
bra-r.6
for
103857672
vvi-u.5
for
100263135
ppo-u.5
for
18103891
ppo-u.5
for
7481780
mtr-u.5
for
11414406
ghi-r.1
for
107906003
ghi-r.1
for
107958316
bna-r.1
for
106365917
bna-r.1
for
106437714
cit-r.1
for
102618748
nta-r.1
for
107789029
nta-r.1
for
107791118


Ortholog ID: 10870
Species tae tae tae hvu bdi osa zma sbi ath gma gma sly bra vvi ppo ppo mtr ghi ghi bna bna cit nta nta
Symbol LOC123102016 LOC123119142 LOC123110131 LOC123395390 LOC100826894 LOC4352863 LOC100281540 LOC8065234 AT4G19670 RTRP3 RTRP4 LOC101249984 LOC103857672 LOC100263135 LOC18103891 LOC7481780 LOC11414406 LOC107906003 LOC107958316 LOC106365917 LOC106437714 LOC102618748 LOC107789029 LOC107791118
Function* ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic uncharacterized LOC100281540 ATP-dependent RNA helicase DEAH12, chloroplastic RING/U-box superfamily protein reverse transcriptase-like domain-containing RBR protein reverse transcriptase-like domain-containing RBR protein E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase arih1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase dbl4 E3 ubiquitin-protein ligase RNF216 E3 ubiquitin-protein ligase RNF216 E3 ubiquitin-protein ligase ARIH1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi00020 Citrate cycle (TCA cycle) 2
bdi00785 Lipoic acid metabolism 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 3
zma01200 Carbon metabolism 3
zma00052 Galactose metabolism 2
zma00520 Amino sugar and nucleotide sugar metabolism 2
zma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 6
ppo00270 Cysteine and methionine metabolism 4
ppo00670 One carbon pool by folate 4
ppo04981 Folate transport and metabolism 3
ppo00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 4
nta04136 Autophagy - other 4
nta04382 Cornified envelope formation 4
nta04120 Ubiquitin mediated proteolysis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123102016 123119142 123110131 123395390 100826894 4352863 100281540 8065234 827711 100784508 100783040 101249984 103857672 100263135 18103891 7481780 11414406 107906003 107958316 106365917 106437714 102618748 107789029 107791118
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