ATTED-II : GeneCoexpression result

Species	Gene	Description
tae-r.2	123103044	uncharacterized LOC123103044
tae-r.2	123120318	R3H domain-containing protein 4
tae-r.2	123111205	uncharacterized LOC123111205
tae-r.2	123099760	uncharacterized LOC123099760
hvu-r.1	123395751	uncharacterized LOC123395751
bdi-r.1	100828039	uncharacterized LOC100828039
osa-u.5	4349765	uncharacterized LOC4349765
osa-u.5	4351484	uncharacterized LOC4351484
zma-u.5	100276056	uncharacterized LOC100276056
zma-u.5	100272960	uncharacterized LOC100272960
sbi-r.1	8085655	uncharacterized LOC8085655
sbi-r.1	8073536	uncharacterized LOC8073536
ath-u.5	AT1G03250	R3H domain protein
gma-u.5	100785058	uncharacterized LOC100785058
bra-r.6	103844525	R3H domain-containing protein 4
vvi-u.5	100254487	uncharacterized LOC100254487
ppo-u.5	112325517	uncharacterized LOC112325517
mtr-u.5	11431198	R3H domain-containing protein 4
ghi-r.1	107914499	uncharacterized LOC107914499
ghi-r.1	107949179	uncharacterized LOC107949179
bna-r.1	106423086	R3H domain-containing protein 4
bna-r.1	106401720	R3H domain-containing protein 4
cit-r.1	102619814	uncharacterized LOC102619814
cit-r.1	102621287	uncharacterized LOC102621287
nta-r.1	107803428	uncharacterized LOC107803428
nta-r.1	107772396	uncharacterized LOC107772396
cre-r.1	CHLRE_01g040100v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003676 [list] [network] nucleic acid binding

(11810 genes)

IEA

Protein

XP_044380467.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, cyto 2, nucl_plas 1, plas 1, cyto_pero 1

(predict for XP_044380467.1)

Subcellular
localization
TargetP

other 9

(predict for XP_044380467.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123103044	tae-r.2 for 123120318	tae-r.2 for 123111205	tae-r.2 for 123099760	hvu-r.1 for 123395751	bdi-r.1 for 100828039	osa-u.5 for 4349765	osa-u.5 for 4351484	zma-u.5 for 100276056	zma-u.5 for 100272960	sbi-r.1 for 8085655	sbi-r.1 for 8073536	ath-u.5 for AT1G03250	gma-u.5 for 100785058	bra-r.6 for 103844525	vvi-u.5 for 100254487	ppo-u.5 for 112325517	mtr-u.5 for 11431198	ghi-r.1 for 107914499	ghi-r.1 for 107949179	bna-r.1 for 106423086	bna-r.1 for 106401720	cit-r.1 for 102619814	cit-r.1 for 102621287	nta-r.1 for 107803428	nta-r.1 for 107772396	cre-r.1 for CHLRE_01g040100v5

Ortholog

Ortholog ID: 8243

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

nta

cre

Symbol

Function^*

uncharacterized LOC123103044

uncharacterized LOC123111205

uncharacterized LOC123099760

uncharacterized LOC123395751

uncharacterized LOC100828039

uncharacterized LOC4349765

uncharacterized LOC4351484

uncharacterized LOC100276056

uncharacterized LOC100272960

uncharacterized LOC8085655

uncharacterized LOC8073536

R3H domain protein

uncharacterized LOC100785058

R3H domain-containing protein 4

uncharacterized LOC100254487

uncharacterized LOC112325517

R3H domain-containing protein 4

uncharacterized LOC107914499

uncharacterized LOC107949179

R3H domain-containing protein 4

uncharacterized LOC102619814

uncharacterized LOC102621287

uncharacterized LOC107803428

uncharacterized LOC107772396

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	3
bdi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00564	Glycerophospholipid metabolism	3
osa04144	Endocytosis	2
osa00561	Glycerolipid metabolism	2
osa00566	Sulfoquinovose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01240	Biosynthesis of cofactors	2
osa00500	Starch and sucrose metabolism	2
osa00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04146	Peroxisome	3
zma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	3
sbi04120	Ubiquitin mediated proteolysis	3
sbi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	2
sbi00280	Valine, leucine and isoleucine degradation	2
sbi00410	beta-Alanine metabolism	2
sbi00640	Propanoate metabolism	2
sbi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	2
bra00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00600	Sphingolipid metabolism	5
ppo04142	Lysosome	2
ppo04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00630	Glyoxylate and dicarboxylate metabolism	4
ghi01200	Carbon metabolism	4
ghi00020	Citrate cycle (TCA cycle)	2
ghi01210	2-Oxocarboxylic acid metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00630	Glyoxylate and dicarboxylate metabolism	4
ghi01200	Carbon metabolism	4
ghi00020	Citrate cycle (TCA cycle)	2
ghi01210	2-Oxocarboxylic acid metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3
cit04136	Autophagy - other	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00230	Purine metabolism	2
nta00240	Pyrimidine metabolism	2
nta00760	Nicotinate and nicotinamide metabolism	2
nta01232	Nucleotide metabolism	2
nta04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00230	Purine metabolism	2
nta00240	Pyrimidine metabolism	2
nta00760	Nicotinate and nicotinamide metabolism	2
nta01232	Nucleotide metabolism	2
nta00740	Riboflavin metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

123103044

123111205

123099760

123395751

100828039

4349765

4351484

100276056

100272960

8085655

8073536

838557

100785058

103844525

100254487

112325517

11431198

107914499

107949179

106423086

106401720

102619814

102621287

107803428

107772396

5715548

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 123103044 (tae-r.2 coexpression data)

Top 50 enrichment test to 123103044 (tae-r.2 coexpression data)


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	nta	cre	sot	sly
Paralog	4	1	1	2	2	2	1	1	1	1	1	1	2	2	2	2	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123103044 (tae-r.2 coexpression data)

Top 50 enrichment test to 123103044 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**