ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123110389	DEAD-box ATP-dependent RNA helicase 9
tae-r.2	123119407	DEAD-box ATP-dependent RNA helicase 9
tae-r.2	123123577	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
tae-r.2	123102215	DEAD-box ATP-dependent RNA helicase 9
hvu-r.1	123453140	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
hvu-r.1	123399972	DEAD-box ATP-dependent RNA helicase 9-like
hvu-r.1	123426284	DEAD-box ATP-dependent RNA helicase 53-like
bdi-r.1	100830452	DEAD-box ATP-dependent RNA helicase 53
bdi-r.1	100823441	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
bdi-r.1	100832999	DEAD-box ATP-dependent RNA helicase 9
osa-u.5	4334649	DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like
osa-u.5	4342387	DEAD-box ATP-dependent RNA helicase 53-like
osa-u.5	4352769	DEAD-box ATP-dependent RNA helicase 9-like
zma-u.5	100281387	nucleolar RNA helicase 2
zma-u.5	100501766	putative DEAD-box ATP-dependent RNA helicase family protein
zma-u.5	103650492	DEAD-box ATP-dependent RNA helicase 9
sbi-r.1	110436660	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
sbi-r.1	8079918	DEAD-box ATP-dependent RNA helicase 53
sbi-r.1	8084385	DEAD-box ATP-dependent RNA helicase 9
ath-u.5	PMH1	putative mitochondrial RNA helicase 1
ath-u.5	PMH2	putative mitochondrial RNA helicase 2
ath-u.5	emb1138	DEAD box RNA helicase (RH3)
gma-u.5	100778436	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
gma-u.5	100779706	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
gma-u.5	100786041	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
sly-u.5	101259710	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
sly-u.5	101263737	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
sly-u.5	101249660	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
bra-r.6	103869091	DEAD-box ATP-dependent RNA helicase 9, mitochondrial
bra-r.6	103854713	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
vvi-u.5	100250610	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
vvi-u.5	100251060	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
ppo-u.5	7479617	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
ppo-u.5	7455874	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
ppo-u.5	18098466	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
mtr-u.5	112421614	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
mtr-u.5	112416391	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
mtr-u.5	11431480	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
ghi-r.1	107927254	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
ghi-r.1	107955430	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
ghi-r.1	107959632	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
bna-r.1	125600788	DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like
bna-r.1	125600348	DEAD-box ATP-dependent RNA helicase 9, mitochondrial-like
bna-r.1	106453849	DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like
sot-r.1	102586405	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
sot-r.1	102599073	DEAD-box ATP-dependent RNA helicase 53-like
sot-r.1	102580637	DEAD-box ATP-dependent RNA helicase 53-like
cit-r.1	102629018	DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like
cit-r.1	102614348	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
nta-r.1	107785925	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
nta-r.1	107793762	DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like
nta-r.1	107806489	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
cre-r.1	CHLRE_17g727700v5	uncharacterized protein

Top 50 coexpressed genes to 123110389 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123110389 (tae-r.2 coexpression data)

CoexMap"123110389"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005829 [list] [network] cytosol

(2324 genes)

IEA

GO MF

GO:0003724 [list] [network] RNA helicase activity	(186 genes)	IEA
GO:0005524 [list] [network] ATP binding	(7858 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(11810 genes)	IEA

Protein

XP_044386818.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, chlo_mito 4, mito 4, cyto_mito 2

(predict for XP_044386818.1)

Subcellular
localization
TargetP

mito 6

(predict for XP_044386818.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123110389	tae-r.2 for 123119407	tae-r.2 for 123123577	tae-r.2 for 123102215	hvu-r.1 for 123453140	hvu-r.1 for 123399972	hvu-r.1 for 123426284	bdi-r.1 for 100830452	bdi-r.1 for 100823441	bdi-r.1 for 100832999	osa-u.5 for 4334649	osa-u.5 for 4342387	osa-u.5 for 4352769	zma-u.5 for 100281387	zma-u.5 for 100501766	zma-u.5 for 103650492	sbi-r.1 for 110436660	sbi-r.1 for 8079918	sbi-r.1 for 8084385	ath-u.5 for PMH1	ath-u.5 for PMH2	ath-u.5 for emb1138	gma-u.5 for 100778436	gma-u.5 for 100779706	gma-u.5 for 100786041	sly-u.5 for 101259710	sly-u.5 for 101263737	sly-u.5 for 101249660	bra-r.6 for 103869091	bra-r.6 for 103854713	vvi-u.5 for 100250610	vvi-u.5 for 100251060	ppo-u.5 for 7479617	ppo-u.5 for 7455874	ppo-u.5 for 18098466	mtr-u.5 for 112421614	mtr-u.5 for 112416391	mtr-u.5 for 11431480	ghi-r.1 for 107927254	ghi-r.1 for 107955430	ghi-r.1 for 107959632	bna-r.1 for 125600788	bna-r.1 for 125600348	bna-r.1 for 106453849	sot-r.1 for 102586405	sot-r.1 for 102599073	sot-r.1 for 102580637	cit-r.1 for 102629018	cit-r.1 for 102614348	nta-r.1 for 107785925	nta-r.1 for 107793762	nta-r.1 for 107806489	cre-r.1 for CHLRE_17g727700v5

Ortholog

Ortholog ID: 1317

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

PMH1

PMH2

emb1138

Function^*

DEAD-box ATP-dependent RNA helicase 9

DEAD-box ATP-dependent RNA helicase 53

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 9-like

DEAD-box ATP-dependent RNA helicase 53-like

DEAD-box ATP-dependent RNA helicase 53

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 9

DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like

DEAD-box ATP-dependent RNA helicase 53-like

DEAD-box ATP-dependent RNA helicase 9-like

nucleolar RNA helicase 2

putative DEAD-box ATP-dependent RNA helicase family protein

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53

DEAD-box ATP-dependent RNA helicase 9

putative mitochondrial RNA helicase 1

putative mitochondrial RNA helicase 2

DEAD box RNA helicase (RH3)

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like

DEAD-box ATP-dependent RNA helicase 9, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53-like

DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4
tae03083	Polycomb repressive complex	4
tae04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	4
sly03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00970	Aminoacyl-tRNA biosynthesis	2
sly03008	Ribosome biogenesis in eukaryotes	2
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	5
vvi03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00710	Carbon fixation by Calvin cycle	2
ghi01200	Carbon metabolism	2
ghi01230	Biosynthesis of amino acids	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2
bna00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	5
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	2
cit03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00260	Glycine, serine and threonine metabolism	2
nta00460	Cyanoamino acid metabolism	2
nta00630	Glyoxylate and dicarboxylate metabolism	2
nta00670	One carbon pool by folate	2
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta03060	Protein export	2

Expression

Expression pattern

Entrez Gene ID^*

123119407

123102215

123188768

123453140

123399972

123426284

100830452

100823441

100832999

4334649

4342387

4352769

100281387

100501766

110436660

8079918

8084385

821800

821802

832713

100786041

100789516

100815635

101259710

101263737

101249660

103854713

103834627

100250610

100251060

7479617

18098466

18099727

112416391

11431480

25490534

107927254

107959632

107959735

125600788

106348589

106418202

102586405

102599073

102580637

102629018

102614348

107793762

107806489

107821343

5722812

The preparation time of this page was 0.2 [sec].


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	3	3	3	3	3	3	3	3	2	2	3	3	3	3	3	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123110389 (tae-r.2 coexpression data)

Top 50 enrichment test to 123110389 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**