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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123112103   bHLH transcription factor RHL1 
 tae-r.2   123103878   bHLH transcription factor RHL1 
 tae-r.2   123145907   transcription factor LRL3 
 hvu-r.1   123410713   transcription factor LRL3-like 
 hvu-r.1   123401628   transcription factor LRL3-like 
 bdi-r.1   100826168   transcription factor bHLH66 
 bdi-r.1   100827783   transcription factor bHLH82 
 osa-u.5   107275733   transcription factor LRL3 
 osa-u.5   9272478   bHLH transcription factor RHL1 
 osa-u.5   107277582   bHLH transcription factor RHL1 
 zma-u.5   103654176   bHLH transcription factor RHL1 
 zma-u.5   103637976   transcription factor LRL3 
 zma-u.5   100284814   uncharacterized LOC100284814 
 sbi-r.1   8068362   transcription factor bHLH66 
 sbi-r.1   8081987   transcription factor bHLH82 
 ath-u.5   LRL1   LJRHL1-like 1 
 ath-u.5   LRL2   LJRHL1-like 2 
 ath-u.5   LRL3   LJRHL1-like 3 
 gma-u.5   100806899   bHLH transcription factor RHL1 
 gma-u.5   100807286   bHLH transcription factor RHL1 
 gma-u.5   100801457   bHLH transcription factor RHL1 
 sly-u.5   101263038   bHLH transcription factor RHL1-like 
 sly-u.5   101244057   bHLH transcription factor RHL1 
 bra-r.6   103842268   transcription factor bHLH66 
 vvi-u.5   100243222   bHLH transcription factor RHL1 
 ppo-u.5   7465950   bHLH transcription factor RHL1 
 ppo-u.5   7489455   bHLH transcription factor RHL1 
 mtr-u.5   11441077   bHLH transcription factor RHL1 
 ghi-r.1   107958930   bHLH transcription factor RHL1 
 ghi-r.1   107906907   bHLH transcription factor RHL1 
 ghi-r.1   121230621   bHLH transcription factor RHL1 
 bna-r.1   106434422   transcription factor LRL2-like 
 bna-r.1   106368621   transcription factor LRL1-like 
 sot-r.1   102592871   transcription factor bHLH66 
 sot-r.1   102592581   transcription factor bHLH66 
 cit-r.1   102625435   bHLH transcription factor RHL1 
 nta-r.1   107783787   bHLH transcription factor RHL1 
 nta-r.1   107769448   bHLH transcription factor RHL1 
 nta-r.1   107817147   bHLH transcription factor RHL1-like 

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Top 50 coexpressed genes to 123112103 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123112103 (tae-r.2 coexpression data)

CoexMap"123112103"


taeLOC123112103 | Entrez gene ID : 123112103    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 2 2 3 3 2 3 3 2 1 1 2 1 3 2 2 1 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1094 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (8281 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (462 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (643 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (2051 genes)  IEA  
Protein XP_044388958.1 [sequence] [blastp]
XP_044388959.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 3,  cysk_nucl 3,  nucl_plas 3  (predict for XP_044388958.1)
nucl 6,  cyto 3,  cysk_nucl 3,  nucl_plas 3  (predict for XP_044388959.1)
Subcellular
localization
TargetP
other 8  (predict for XP_044388958.1)
other 8  (predict for XP_044388959.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123112103
tae-r.2
for
123103878
tae-r.2
for
123145907
hvu-r.1
for
123410713
hvu-r.1
for
123401628
bdi-r.1
for
100826168
bdi-r.1
for
100827783
osa-u.5
for
107275733
osa-u.5
for
9272478
osa-u.5
for
107277582
zma-u.5
for
103654176
zma-u.5
for
103637976
zma-u.5
for
100284814
sbi-r.1
for
8068362
sbi-r.1
for
8081987
ath-u.5
for
LRL1
ath-u.5
for
LRL2
ath-u.5
for
LRL3
gma-u.5
for
100806899
gma-u.5
for
100807286
gma-u.5
for
100801457
sly-u.5
for
101263038
sly-u.5
for
101244057
bra-r.6
for
103842268
vvi-u.5
for
100243222
ppo-u.5
for
7465950
ppo-u.5
for
7489455
mtr-u.5
for
11441077
ghi-r.1
for
107958930
ghi-r.1
for
107906907
ghi-r.1
for
121230621
bna-r.1
for
106434422
bna-r.1
for
106368621
sot-r.1
for
102592871
sot-r.1
for
102592581
cit-r.1
for
102625435
nta-r.1
for
107783787
nta-r.1
for
107769448
nta-r.1
for
107817147


Ortholog ID: 1959
Species tae hvu hvu bdi bdi osa osa osa zma zma sbi sbi ath ath ath gma gma gma sly sly vvi ppo ppo mtr ghi ghi ghi bna sot sot cit nta nta nta
Symbol LOC123139121 LOC123410713 LOC123399014 LOC100826168 LOC100827783 LOC107275733 LOC9272478 LOC107277582 LOC103654176 LOC100284814 LOC8068362 LOC8081987 LRL1 LRL2 LRL3 LOC100806899 LOC100807286 LOC100801457 LOC101263038 LOC101244057 LOC100243222 LOC7465950 LOC7489455 LOC11441077 LOC107906907 LOC121230621 LOC107901583 LOC106412309 LOC102592871 LOC102592581 LOC102625435 LOC107783787 LOC107769448 LOC107817147
Function* transcription factor LRL3 transcription factor LRL3-like bHLH transcription factor RHL1-like transcription factor bHLH66 transcription factor bHLH82 transcription factor LRL3 bHLH transcription factor RHL1 bHLH transcription factor RHL1 bHLH transcription factor RHL1 uncharacterized LOC100284814 transcription factor bHLH66 transcription factor bHLH82 LJRHL1-like 1 LJRHL1-like 2 LJRHL1-like 3 bHLH transcription factor RHL1 bHLH transcription factor RHL1 bHLH transcription factor RHL1 bHLH transcription factor RHL1-like bHLH transcription factor RHL1 bHLH transcription factor RHL1 bHLH transcription factor RHL1 bHLH transcription factor RHL1 bHLH transcription factor RHL1 bHLH transcription factor RHL1 bHLH transcription factor RHL1 bHLH transcription factor RHL1 transcription factor LRL1 transcription factor bHLH66 transcription factor bHLH66 bHLH transcription factor RHL1 bHLH transcription factor RHL1 bHLH transcription factor RHL1 bHLH transcription factor RHL1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 11
ath01200 Carbon metabolism 10
ath00010 Glycolysis / Gluconeogenesis 7
ath00710 Carbon fixation by Calvin cycle 6
ath00030 Pentose phosphate pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
gma01230 Biosynthesis of amino acids 3
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00790 Folate biosynthesis 2
sly00240 Pyrimidine metabolism 2
sly01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 6
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
sot04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00564 Glycerophospholipid metabolism 2
nta00565 Ether lipid metabolism 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 7
nta01240 Biosynthesis of cofactors 5
nta00240 Pyrimidine metabolism 3
nta01232 Nucleotide metabolism 3
nta00053 Ascorbate and aldarate metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123139121 123410713 123399014 100826168 100827783 107275733 9272478 107277582 103654176 100284814 8068362 8081987 816961 829223 835913 100806899 100807286 100801457 101263038 101244057 100243222 7465950 7489455 11441077 107906907 121230621 107901583 106412309 102592871 102592581 102625435 107783787 107769448 107817147
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