ATTED-II : GeneCoexpression result

Species	Gene	Description
tae-r.2	123044953	uncharacterized LOC123044953
bdi-r.1	104584192	uncharacterized LOC104584192
bdi-r.1	104581883	uncharacterized LOC104581883
bdi-r.1	106866148	31 kDa ribonucleoprotein, chloroplastic-like
osa-u.5	4331574	uncharacterized LOC4331574
osa-u.5	4348841	RPM1 interacting protein 13
zma-u.5	103631697	RPM1 interacting protein 13
zma-u.5	100277494	uncharacterized LOC100277494
zma-u.5	100277964	RPM1 interacting protein 13
sbi-r.1	8059261	uncharacterized LOC8059261
ath-u.5	RIN13	RPM1 interacting protein 13
ath-u.5	AT4G27660	uncharacterized protein
ath-u.5	AT4G28690	uncharacterized protein
gma-u.5	100781552	uncharacterized LOC100781552
sly-u.5	101254939	uncharacterized LOC101254939
sly-u.5	101251758	RPM1 interacting protein 13
bra-r.6	103828187	uncharacterized LOC103828187
vvi-u.5	100258397	RPM1 interacting protein 13
ppo-u.5	7461482	RPM1 interacting protein 13
ppo-u.5	7493465	RPM1 interacting protein 13
mtr-u.5	25489793	uncharacterized LOC25489793
mtr-u.5	25484195	uncharacterized LOC25484195
mtr-u.5	11443485	uncharacterized LOC11443485
ghi-r.1	107916541	uncharacterized LOC107916541
ghi-r.1	107924419	uncharacterized LOC107924419
ghi-r.1	107924467	uncharacterized LOC107924467
bna-r.1	106368838	uncharacterized LOC106368838
sot-r.1	102588818	uncharacterized LOC102588818
sot-r.1	102591225	uncharacterized LOC102591225
cit-r.1	102629006	RPM1 interacting protein 13-like
cit-r.1	102608244	RPM1 interacting protein 13
nta-r.1	107780091	uncharacterized LOC107780091
nta-r.1	107791845	uncharacterized LOC107791845
cre-r.1	CHLRE_03g211857v5	uncharacterized protein
cre-r.1	CHLRE_03g212417v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003676 [list] [network] nucleic acid binding

(11810 genes)

IEA

Protein

XP_044401537.1 [sequence] [blastp]
XP_044401538.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 3, cyto 3, cyto_nucl 3	(predict for XP_044401537.1)
chlo 4, nucl 3, cyto 3, cyto_nucl 3	(predict for XP_044401538.1)

Subcellular
localization
TargetP

other 6, chlo 6	(predict for XP_044401537.1)
other 6, chlo 6	(predict for XP_044401538.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123044953	bdi-r.1 for 104584192	bdi-r.1 for 104581883	bdi-r.1 for 106866148	osa-u.5 for 4331574	osa-u.5 for 4348841	zma-u.5 for 103631697	zma-u.5 for 100277494	zma-u.5 for 100277964	sbi-r.1 for 8059261	ath-u.5 for RIN13	ath-u.5 for AT4G27660	ath-u.5 for AT4G28690	gma-u.5 for 100781552	sly-u.5 for 101254939	sly-u.5 for 101251758	bra-r.6 for 103828187	vvi-u.5 for 100258397	ppo-u.5 for 7461482	ppo-u.5 for 7493465	mtr-u.5 for 25489793	mtr-u.5 for 25484195	mtr-u.5 for 11443485	ghi-r.1 for 107916541	ghi-r.1 for 107924419	ghi-r.1 for 107924467	bna-r.1 for 106368838	sot-r.1 for 102588818	sot-r.1 for 102591225	cit-r.1 for 102629006	cit-r.1 for 102608244	nta-r.1 for 107780091	nta-r.1 for 107791845	cre-r.1 for CHLRE_03g211857v5	cre-r.1 for CHLRE_03g212417v5

Ortholog

Ortholog ID: 790

Species

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

sot

cit

nta

cre

Symbol

RIN13

Function^*

uncharacterized LOC123410946

uncharacterized LOC123430480

uncharacterized LOC104584192

uncharacterized LOC100828814

uncharacterized LOC4331574

RPM1 interacting protein 13

uncharacterized LOC100277494

RPM1 interacting protein 13

uncharacterized LOC8059261

RPM1 interacting protein 13

uncharacterized protein

uncharacterized LOC102665987

uncharacterized LOC101254939

RPM1 interacting protein 13

uncharacterized LOC103838001

RPM1 interacting protein 13

uncharacterized LOC25489793

uncharacterized LOC11443485

GATA zinc finger domain-containing protein 14

uncharacterized LOC107904545

uncharacterized LOC107961164

uncharacterized LOC102588818

uncharacterized LOC102591225

RPM1 interacting protein 13-like

RPM1 interacting protein 13

uncharacterized LOC107791845

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00220	Arginine biosynthesis	2
bdi00250	Alanine, aspartate and glutamate metabolism	2
bdi00630	Glyoxylate and dicarboxylate metabolism	2
bdi00910	Nitrogen metabolism	2
bdi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03440	Homologous recombination	2
zma03460	Fanconi anemia pathway	2
zma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00510	N-Glycan biosynthesis	4
gma00513	Various types of N-glycan biosynthesis	4
gma04141	Protein processing in endoplasmic reticulum	4
gma00240	Pyrimidine metabolism	2
gma00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00260	Glycine, serine and threonine metabolism	4
ppo01200	Carbon metabolism	4
ppo00630	Glyoxylate and dicarboxylate metabolism	3
ppo00670	One carbon pool by folate	3
ppo00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	5
mtr00230	Purine metabolism	2
mtr01232	Nucleotide metabolism	2
mtr00730	Thiamine metabolism	2
mtr00740	Riboflavin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	3
ghi03015	mRNA surveillance pathway	3
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2
sot04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04814	Motor proteins	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

123410946

123430480

104584192

100828814

4331574

4348841

103631697

100277494

100277964

8059261

816550

828987

102665987

101254939

101251758

103838001

100258397

7461482

7493465

25489793

11443485

11428227

107904545

107961164

102588818

102591225

102629006

102608244

107791845

5725015

5724966

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 123044953 (tae-r.2 coexpression data)

Top 50 enrichment test to 123044953 (tae-r.2 coexpression data)


Species	tae	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre	hvu
Paralog	1	3	2	3	1	3	1	2	1	1	2	3	3	1	2	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123044953 (tae-r.2 coexpression data)

Top 50 enrichment test to 123044953 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**