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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123128955   28 kDa ribonucleoprotein, chloroplastic 
 tae-r.2   123135014   28 kDa ribonucleoprotein, chloroplastic 
 tae-r.2   123146119   28 kDa ribonucleoprotein, chloroplastic 
 hvu-r.1   123401763   31 kDa ribonucleoprotein, chloroplastic 
 bdi-r.1   100827680   28 kDa ribonucleoprotein, chloroplastic 
 osa-u.5   4331127   28 kDa ribonucleoprotein, chloroplastic 
 zma-u.5   100217196   uncharacterized LOC100217196 
 sbi-r.1   8084704   28 kDa ribonucleoprotein, chloroplastic 
 ath-u.5   AT1G60000   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100820203   31 kDa ribonucleoprotein, chloroplastic-like 
 gma-u.5   100801829   28 kDa ribonucleoprotein, chloroplastic 
 sly-u.5   101246091   28 kDa ribonucleoprotein, chloroplastic 
 bra-r.6   103838564   28 kDa ribonucleoprotein, chloroplastic 
 vvi-u.5   104879303   28 kDa ribonucleoprotein, chloroplastic 
 ppo-u.5   7480891   31 kDa ribonucleoprotein, chloroplastic 
 ppo-u.5   7475422   31 kDa ribonucleoprotein, chloroplastic 
 mtr-u.5   11434981   28 kDa ribonucleoprotein, chloroplastic 
 ghi-r.1   107932168   28 kDa ribonucleoprotein, chloroplastic 
 ghi-r.1   107940137   29 kDa ribonucleoprotein A, chloroplastic 
 bna-r.1   106376601   29 kDa ribonucleoprotein, chloroplastic 
 bna-r.1   106418706   28 kDa ribonucleoprotein, chloroplastic 
 sot-r.1   102580020   28 kDa ribonucleoprotein, chloroplastic 
 cit-r.1   102626548   28 kDa ribonucleoprotein, chloroplastic 
 nta-r.1   107832323   28 kDa ribonucleoprotein, chloroplastic 
 nta-r.1   142168697   28 kDa ribonucleoprotein, chloroplastic-like 

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Top 50 coexpressed genes to 123128955 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123128955 (tae-r.2 coexpression data)

CoexMap"123128955"


taeLOC123128955 | Entrez gene ID : 123128955    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 1 1 1 1 2 1 1 1 2 1 2 2 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1901259 [list] [network] chloroplast rRNA processing  (54 genes)  IEA  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (303 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (862 genes)  IEA  
Protein XP_044405013.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for XP_044405013.1)
Subcellular
localization
TargetP
chlo 7,  mito 3  (predict for XP_044405013.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123128955
tae-r.2
for
123135014
tae-r.2
for
123146119
hvu-r.1
for
123401763
bdi-r.1
for
100827680
osa-u.5
for
4331127
zma-u.5
for
100217196
sbi-r.1
for
8084704
ath-u.5
for
AT1G60000
gma-u.5
for
100820203
gma-u.5
for
100801829
sly-u.5
for
101246091
bra-r.6
for
103838564
vvi-u.5
for
104879303
ppo-u.5
for
7480891
ppo-u.5
for
7475422
mtr-u.5
for
11434981
ghi-r.1
for
107932168
ghi-r.1
for
107940137
bna-r.1
for
106376601
bna-r.1
for
106418706
sot-r.1
for
102580020
cit-r.1
for
102626548
nta-r.1
for
107832323
nta-r.1
for
142168697


Ortholog ID: 10526
Species tae tae tae hvu bdi osa zma sbi ath gma gma sly bra vvi ppo ppo mtr ghi ghi bna bna sot cit nta nta
Symbol LOC123128955 LOC123135014 LOC123146119 LOC123401763 LOC100827680 LOC4331127 LOC100217196 LOC8084704 AT1G60000 LOC100820203 LOC100801829 LOC101246091 LOC103838564 LOC104879303 LOC7480891 LOC7475422 LOC11434981 LOC107932168 LOC107940137 LOC106376601 LOC106418706 LOC102580020 LOC102626548 LOC107832323 LOC142168697
Function* 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic uncharacterized LOC100217196 28 kDa ribonucleoprotein, chloroplastic RNA-binding (RRM/RBD/RNP motifs) family protein 31 kDa ribonucleoprotein, chloroplastic-like 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic 29 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
bdi00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
zma00030 Pentose phosphate pathway 2
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 5
ath00196 Photosynthesis - antenna proteins 2
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 3
gma00710 Carbon fixation by Calvin cycle 3
gma01200 Carbon metabolism 3
gma00030 Pentose phosphate pathway 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 5
gma00710 Carbon fixation by Calvin cycle 4
gma00030 Pentose phosphate pathway 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 5
sly00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00710 Carbon fixation by Calvin cycle 4
bra01200 Carbon metabolism 4
bra00030 Pentose phosphate pathway 3
bra00860 Porphyrin metabolism 2
bra00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 5
vvi01240 Biosynthesis of cofactors 3
vvi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 14
ppo00860 Porphyrin metabolism 2
ppo00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 9
mtr00710 Carbon fixation by Calvin cycle 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 9
ghi00630 Glyoxylate and dicarboxylate metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 9
ghi00630 Glyoxylate and dicarboxylate metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 15
bna00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 6
bna00860 Porphyrin metabolism 4
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 7
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 2
nta00195 Photosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123128955 123135014 123146119 123401763 100827680 4331127 100217196 8084704 842294 100820203 100801829 101246091 103838564 104879303 7480891 7475422 11434981 107932168 107940137 106376601 106418706 102580020 102626548 107832323 142168697
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