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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123136977   protein CLP1 homolog 
 tae-r.2   123127304   protein CLP1 homolog 
 tae-r.2   123144382   protein CLP1 homolog 
 hvu-r.1   123403173   protein CLP1 homolog 
 bdi-r.1   100820915   protein CLP1 homolog 
 osa-u.5   4328733   protein CLP1 homolog 
 zma-u.5   100284798   pre-mRNA cleavage complex II protein Clp1 
 sbi-r.1   8082954   protein CLP1 homolog 
 ath-u.5   CLPS3   CLP-similar protein 3 
 gma-u.5   100780061   protein CLP1 homolog 
 sly-u.5   101249197   protein CLP1 homolog 
 bra-r.6   103859052   protein CLP1 homolog 
 vvi-u.5   100242380   protein CLP1 homolog 
 ppo-u.5   7495951   protein CLP1 homolog 
 mtr-u.5   11428339   protein CLP1 homolog 
 ghi-r.1   107959817   protein CLP1 homolog 
 ghi-r.1   107886853   protein CLP1 homolog 
 bna-r.1   106438992   protein CLP1 homolog 
 bna-r.1   106452813   protein CLP1 homolog 
 sot-r.1   102579213   protein CLP1 homolog 
 cit-r.1   102629299   protein CLP1 homolog 
 nta-r.1   107788639   protein CLP1 homolog 
 nta-r.1   107830231   protein CLP1 homolog 
 cre-r.1   CHLRE_03g194800v5   uncharacterized protein 

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Top 50 coexpressed genes to 123136977 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123136977 (tae-r.2 coexpression data)

CoexMap"123136977"


taeLOC123136977 | Entrez gene ID : 123136977    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes03015 [list] [network] mRNA surveillance pathway (388 genes)
GO BP
GO:0006388 [list] [network] tRNA splicing, via endonucleolytic cleavage and ligation  (29 genes)  IEA  
GO:0031124 [list] [network] mRNA 3'-end processing  (56 genes)  IEA  
GO CC
GO:0005849 [list] [network] mRNA cleavage factor complex  (43 genes)  IEA  
GO:0005634 [list] [network] nucleus  (8281 genes)  IEA  
GO MF
GO:0051731 [list] [network] polynucleotide 5'-hydroxyl-kinase activity  (12 genes)  IEA  
Protein XP_044412442.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 1,  cyto_nucl 1,  mito 1,  vacu 1,  pero 1  (predict for XP_044412442.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_044412442.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123136977
tae-r.2
for
123127304
tae-r.2
for
123144382
hvu-r.1
for
123403173
bdi-r.1
for
100820915
osa-u.5
for
4328733
zma-u.5
for
100284798
sbi-r.1
for
8082954
ath-u.5
for
CLPS3
gma-u.5
for
100780061
sly-u.5
for
101249197
bra-r.6
for
103859052
vvi-u.5
for
100242380
ppo-u.5
for
7495951
mtr-u.5
for
11428339
ghi-r.1
for
107959817
ghi-r.1
for
107886853
bna-r.1
for
106438992
bna-r.1
for
106452813
sot-r.1
for
102579213
cit-r.1
for
102629299
nta-r.1
for
107788639
nta-r.1
for
107830231
cre-r.1
for
CHLRE_03g194800v5


Ortholog ID: 10729
Species tae tae tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC123136977 LOC123127304 LOC123144382 LOC123403173 LOC100820915 LOC4328733 LOC100284798 LOC8082954 CLPS3 LOC100780061 LOC101249197 LOC103859052 LOC100242380 LOC7495951 LOC11428339 LOC107959817 LOC107886853 LOC106438992 LOC106452813 LOC102579213 LOC102629299 LOC107788639 LOC107830231 CHLRE_03g194800v5
Function* protein CLP1 homolog protein CLP1 homolog protein CLP1 homolog protein CLP1 homolog protein CLP1 homolog protein CLP1 homolog pre-mRNA cleavage complex II protein Clp1 protein CLP1 homolog CLP-similar protein 3 protein CLP1 homolog protein CLP1 homolog protein CLP1 homolog protein CLP1 homolog protein CLP1 homolog protein CLP1 homolog protein CLP1 homolog protein CLP1 homolog protein CLP1 homolog protein CLP1 homolog protein CLP1 homolog protein CLP1 homolog protein CLP1 homolog protein CLP1 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 6
tae03083 Polycomb repressive complex 6
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 5
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
bdi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
zma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 3
sbi03420 Nucleotide excision repair 3
sbi03083 Polycomb repressive complex 2
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 5
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 5
sly03040 Spliceosome 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra03082 ATP-dependent chromatin remodeling 2
bra03083 Polycomb repressive complex 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03083 Polycomb repressive complex 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
mtr03040 Spliceosome 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
sot03008 Ribosome biogenesis in eukaryotes 2
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01232 Nucleotide metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123136977 123127304 123144382 123403173 100820915 4328733 100284798 8082954 819626 100780061 101249197 103859052 100242380 7495951 11428339 107959817 107886853 106438992 106452813 102579213 102629299 107788639 107830231 5718729
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