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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123139872   protein LUTEIN DEFICIENT 5, chloroplastic 
 tae-r.2   123128994   protein LUTEIN DEFICIENT 5, chloroplastic 
 tae-r.2   123146173   protein LUTEIN DEFICIENT 5, chloroplastic 
 hvu-r.1   123403226   protein LUTEIN DEFICIENT 5, chloroplastic-like 
 hvu-r.1   123405873   protein LUTEIN DEFICIENT 5, chloroplastic-like 
 bdi-r.1   100834203   protein LUTEIN DEFICIENT 5, chloroplastic 
 osa-u.5   4331152   protein LUTEIN DEFICIENT 5, chloroplastic 
 zma-u.5   103627895   protein LUTEIN DEFICIENT 5, chloroplastic 
 sbi-r.1   8055312   protein LUTEIN DEFICIENT 5, chloroplastic 
 ath-u.5   CYP97A3   cytochrome P450, family 97, subfamily A, polypeptide 3 
 gma-u.5   100791400   protein LUTEIN DEFICIENT 5, chloroplastic 
 gma-u.5   CYP97C10   protein LUTEIN DEFICIENT 5, chloroplastic 
 sly-u.5   CYP97A29   cytochrome P450-type monooxygenase 97A29 
 bra-r.6   103833794   protein LUTEIN DEFICIENT 5, chloroplastic 
 vvi-u.5   100240996   protein LUTEIN DEFICIENT 5, chloroplastic 
 ppo-u.5   7477718   protein LUTEIN DEFICIENT 5, chloroplastic 
 mtr-u.5   11409691   protein LUTEIN DEFICIENT 5, chloroplastic 
 ghi-r.1   107912958   protein LUTEIN DEFICIENT 5, chloroplastic 
 ghi-r.1   107919219   protein LUTEIN DEFICIENT 5, chloroplastic 
 bna-r.1   106401087   protein LUTEIN DEFICIENT 5, chloroplastic 
 bna-r.1   106414823   protein LUTEIN DEFICIENT 5, chloroplastic 
 sot-r.1   102591173   protein LUTEIN DEFICIENT 5, chloroplastic 
 cit-r.1   102620327   protein LUTEIN DEFICIENT 5, chloroplastic 
 nta-r.1   107820237   protein LUTEIN DEFICIENT 5, chloroplastic 
 nta-r.1   107775451   protein LUTEIN DEFICIENT 5, chloroplastic 
 cre-r.1   CHLRE_16g678437v5   uncharacterized protein 
 cre-r.1   CHLRE_02g142266v5   uncharacterized protein 

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Top 50 coexpressed genes to 123139872 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123139872 (tae-r.2 coexpression data)

CoexMap"123139872"


taeLOC123139872 | Entrez gene ID : 123139872    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 2 1 1 1 1 1 2 1 1 1 1 1 2 2 1 1 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes00906 [list] [network] Carotenoid biosynthesis (107 genes)
GO BP
GO:0016123 [list] [network] xanthophyll biosynthetic process  (14 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (1890 genes)  IEA  
GO MF
GO:0010291 [list] [network] beta-carotene 3-hydroxylase activity  (9 genes)  IEA  
GO:0005506 [list] [network] iron ion binding  (1670 genes)  IEA  
GO:0016705 [list] [network] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  (1736 genes)  IEA  
GO:0020037 [list] [network] heme binding  (2231 genes)  IEA  
Protein XP_044415500.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_044415500.1)
Subcellular
localization
TargetP
chlo 6  (predict for XP_044415500.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123139872
tae-r.2
for
123128994
tae-r.2
for
123146173
hvu-r.1
for
123403226
hvu-r.1
for
123405873
bdi-r.1
for
100834203
osa-u.5
for
4331152
zma-u.5
for
103627895
sbi-r.1
for
8055312
ath-u.5
for
CYP97A3
gma-u.5
for
100791400
gma-u.5
for
CYP97C10
sly-u.5
for
CYP97A29
bra-r.6
for
103833794
vvi-u.5
for
100240996
ppo-u.5
for
7477718
mtr-u.5
for
11409691
ghi-r.1
for
107912958
ghi-r.1
for
107919219
bna-r.1
for
106401087
bna-r.1
for
106414823
sot-r.1
for
102591173
cit-r.1
for
102620327
nta-r.1
for
107820237
nta-r.1
for
107775451
cre-r.1
for
CHLRE_16g678437v5
cre-r.1
for
CHLRE_02g142266v5


Ortholog ID: 9243
Species tae tae tae hvu hvu bdi osa zma sbi ath gma gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta cre cre
Symbol LOC123139872 LOC123128994 LOC123146173 LOC123403226 LOC123405873 LOC100834203 LOC4331152 LOC103627895 LOC8055312 CYP97A3 LOC100791400 CYP97C10 CYP97A29 LOC103833794 LOC100240996 LOC7477718 LOC11409691 LOC107912958 LOC107919219 LOC106401087 LOC106414823 LOC102591173 LOC102620327 LOC107820237 LOC107775451 CHLRE_16g678437v5 CHLRE_02g142266v5
Function* protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic-like protein LUTEIN DEFICIENT 5, chloroplastic-like protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic cytochrome P450, family 97, subfamily A, polypeptide 3 protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic cytochrome P450-type monooxygenase 97A29 protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic protein LUTEIN DEFICIENT 5, chloroplastic uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
tae04075 Plant hormone signal transduction 2
tae00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 2
hvu04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00906 Carotenoid biosynthesis 2
bdi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
zma00906 Carotenoid biosynthesis 2
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 4
sbi03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00630 Glyoxylate and dicarboxylate metabolism 5
ath00260 Glycine, serine and threonine metabolism 3
ath01200 Carbon metabolism 3
ath01230 Biosynthesis of amino acids 3
ath00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 4
gma00500 Starch and sucrose metabolism 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 2
sly03010 Ribosome 2
sly00906 Carotenoid biosynthesis 2
sly00561 Glycerolipid metabolism 2
sly00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00051 Fructose and mannose metabolism 2
bra00230 Purine metabolism 2
bra00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 2
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 7
mtr00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 7
ghi00260 Glycine, serine and threonine metabolism 6
ghi00630 Glyoxylate and dicarboxylate metabolism 6
ghi00670 One carbon pool by folate 4
ghi00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 7
ghi00260 Glycine, serine and threonine metabolism 6
ghi00630 Glyoxylate and dicarboxylate metabolism 6
ghi00670 One carbon pool by folate 4
ghi00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00740 Riboflavin metabolism 2
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 2
nta00561 Glycerolipid metabolism 2
nta00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00906 Carotenoid biosynthesis 6
cre00900 Terpenoid backbone biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123139872 123128994 123146173 123403226 123405873 100834203 4331152 103627895 8055312 840067 100791400 100780770 100322875 103833794 100240996 7477718 11409691 107912958 107919219 106401087 106414823 102591173 102620327 107820237 107775451 5724445 5726062
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