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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123139901   serine/threonine-protein phosphatase PP1 
 osa-u.5   4326473   serine/threonine-protein phosphatase PP1 
 osa-u.5   4331166   serine/threonine-protein phosphatase PP1 
 zma-u.5   103635487   serine/threonine-protein phosphatase PP1 
 zma-u.5   100272981   Serine/threonine-protein phosphatase PP1 isozyme 2 
 zma-u.5   100282306   serine/threonine-protein phosphatase PP1 
 ath-u.5   TOPP6   type one serine/threonine protein phosphatase 6 
 ath-u.5   TOPP3   type one serine/threonine protein phosphatase 3 
 ath-u.5   TOPP2   type one serine/threonine protein phosphatase 2 
 gma-u.5   100807069   serine/threonine-protein phosphatase PP1 isozyme 4-like 
 gma-u.5   100808597   serine/threonine-protein phosphatase PP1 
 gma-u.5   100811593   serine/threonine-protein phosphatase PP1 isozyme 4-like 
 sly-u.5   101258308   serine/threonine-protein phosphatase PP1 
 sly-u.5   101254698   serine/threonine-protein phosphatase PP1 isozyme 3 
 sly-u.5   101251329   serine/threonine-protein phosphatase PP1 
 vvi-u.5   100250219   serine/threonine-protein phosphatase PP1 
 vvi-u.5   100240794   serine/threonine-protein phosphatase PP1 isozyme 3 
 vvi-u.5   100240815   serine/threonine-protein phosphatase PP1 
 ppo-u.5   7458113   serine/threonine-protein phosphatase PP1 isozyme 4 
 ppo-u.5   7474621   serine/threonine-protein phosphatase PP1 
 ppo-u.5   18101604   serine/threonine-protein phosphatase PP1 isozyme 3 
 mtr-u.5   11424441   serine/threonine-protein phosphatase PP1 isozyme 3 
 mtr-u.5   11425683   serine/threonine-protein phosphatase PP1 

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Top 50 coexpressed genes to 123139901 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123139901 (tae-r.2 coexpression data)

CoexMap"123139901"


taeLOC123139901 | Entrez gene ID : 123139901    
Species tae osa zma ath gma sly vvi ppo mtr bdi hvu bra cit bna sbi ghi sot nta cre
Paralog 1 2 3 3 3 3 3 3 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes03015 [list] [network] mRNA surveillance pathway (388 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (8281 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13575 genes)  IEA  
GO MF
GO:0004722 [list] [network] protein serine/threonine phosphatase activity  (335 genes)  IEA  
Protein XP_044415544.1 [sequence] [blastp]
XP_044415545.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  cyto_E.R. 3,  chlo 2,  plas 1,  extr 1,  pero 1,  golg 1,  golg_plas 1  (predict for XP_044415544.1)
cyto 4,  cyto_E.R. 3,  chlo 2,  plas 1,  extr 1,  pero 1,  golg 1,  golg_plas 1  (predict for XP_044415545.1)
Subcellular
localization
TargetP
other 8  (predict for XP_044415544.1)
other 8  (predict for XP_044415545.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123139901
osa-u.5
for
4326473
osa-u.5
for
4331166
zma-u.5
for
103635487
zma-u.5
for
100272981
zma-u.5
for
100282306
ath-u.5
for
TOPP6
ath-u.5
for
TOPP3
ath-u.5
for
TOPP2
gma-u.5
for
100807069
gma-u.5
for
100808597
gma-u.5
for
100811593
sly-u.5
for
101258308
sly-u.5
for
101254698
sly-u.5
for
101251329
vvi-u.5
for
100250219
vvi-u.5
for
100240794
vvi-u.5
for
100240815
ppo-u.5
for
7458113
ppo-u.5
for
7474621
ppo-u.5
for
18101604
mtr-u.5
for
11424441
mtr-u.5
for
11425683


Ortholog ID: 188
Species tae tae hvu bdi bdi osa osa zma zma sbi ath ath gma gma sly sly bra bra vvi vvi ppo ppo mtr mtr ghi ghi bna bna sot sot cit cit nta nta cre
Symbol LOC123180557 LOC123068691 LOC123399686 LOC100841528 LOC100829796 LOC4340228 LOC4326473 LOC103635487 LOC542269 LOC8075330 TOPP9 TOPP5 LOC100780047 LOC100811593 LOC101251329 LOC101260053 LOC103827974 LOC103856650 LOC100259840 LOC100258649 LOC7458113 LOC7468609 LOC11432243 LOC11431740 LOC107952129 LOC107906581 LOC106388742 LOC106366228 LOC102602508 LOC102590224 LOC102612516 LOC102610810 LOC107828780 LOC107801901 CHLRE_06g292550v5
Function* serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase alpha-3 isoform serine/threonine-protein phosphatase PP1-like serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 ser/thr protein phosphatase 1 serine/threonine-protein phosphatase PP1 Calcineurin-like metallo-phosphoesterase superfamily protein type one serine/threonine protein phosphatase 5 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 isozyme 4-like serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 isozyme 1 serine/threonine-protein phosphatase PP1 isozyme 7 serine/threonine-protein phosphatase PP1 isozyme 2 serine/threonine-protein phosphatase PP1 isozyme 4 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 isozyme 4 serine/threonine-protein phosphatase PP1 isozyme 1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 isozyme 2 serine/threonine-protein phosphatase PP1 isozyme 2 serine/threonine-protein phosphatase PP1 isozyme 6-like serine/threonine-protein phosphatase PP1 isozyme 2 serine/threonine-protein phosphatase PP1-like serine/threonine-protein phosphatase PP1 isozyme 2 serine/threonine-protein phosphatase PP1 isozyme 4 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 isozyme 3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03015 mRNA surveillance pathway 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
zma03015 mRNA surveillance pathway 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 2
zma04120 Ubiquitin mediated proteolysis 2
zma04141 Protein processing in endoplasmic reticulum 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 5
ath04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma00190 Oxidative phosphorylation 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 4
sly03013 Nucleocytoplasmic transport 3
sly03040 Spliceosome 3
sly03008 Ribosome biogenesis in eukaryotes 2
sly03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
vvi04120 Ubiquitin mediated proteolysis 3
vvi04382 Cornified envelope formation 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
ppo03040 Spliceosome 3
ppo03015 mRNA surveillance pathway 2
ppo03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00561 Glycerolipid metabolism 2
ppo00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 10
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 5
bna03015 mRNA surveillance pathway 4
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 3
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 6
nta04016 MAPK signaling pathway - plant 4
nta04075 Plant hormone signal transduction 4
nta04136 Autophagy - other 2
nta04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03015 mRNA surveillance pathway 4
cre04382 Cornified envelope formation 3
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123180557 123068691 123399686 100841528 100829796 4340228 4326473 103635487 542269 8075330 819724 823835 100780047 100811593 101251329 101260053 103827974 103856650 100259840 100258649 7458113 7468609 11432243 11431740 107952129 107906581 106388742 106366228 102602508 102590224 102612516 102610810 107828780 107801901 5727122
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