ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123147298	protein SUPPRESSOR OF PHYA-105 1
tae-r.2	123069052	protein SUPPRESSOR OF PHYA-105 1
tae-r.2	123183200	protein SUPPRESSOR OF PHYA-105 1
hvu-r.1	123451067	protein SUPPRESSOR OF PHYA-105 1-like
bdi-r.1	100822627	protein SUPPRESSOR OF PHYA-105 1
osa-u.5	4339663	protein SUPPRESSOR OF PHYA-105 1
zma-u.5	103635349	protein SUPPRESSOR OF PHYA-105 1
zma-u.5	100384276	Protein SUPPRESSOR OF PHYA-105 1
sbi-r.1	8074618	protein SUPPRESSOR OF PHYA-105 1
ath-u.5	SPA1	SPA (suppressor of phyA-105) protein family
ath-u.5	SPA2	SPA1-related 2
gma-u.5	100784300	protein SPA1-RELATED 2
gma-u.5	100778303	protein SPA1-RELATED 2
gma-u.5	100776980	protein SPA1-RELATED 2
sly-u.5	101249027	protein SUPPRESSOR OF PHYA-105 1-like
sly-u.5	101263834	protein SPA1-RELATED 2
bra-r.6	103866477	protein SUPPRESSOR OF PHYA-105 1
bra-r.6	103833904	protein SPA1-RELATED 2
bra-r.6	103858211	protein SUPPRESSOR OF PHYA-105 1
vvi-u.5	100256812	protein SUPPRESSOR OF PHYA-105 1
vvi-u.5	100257085	protein SPA1-RELATED 2
ppo-u.5	7479329	protein SPA1-RELATED 2
ppo-u.5	18097053	protein SPA1-RELATED 2
ppo-u.5	7492759	protein SUPPRESSOR OF PHYA-105 1
mtr-u.5	25500742	protein SUPPRESSOR OF PHYA-105 1
mtr-u.5	11437198	protein SPA1-RELATED 2
ghi-r.1	107909782	protein SUPPRESSOR OF PHYA-105 1
ghi-r.1	107924358	protein SUPPRESSOR OF PHYA-105 1
ghi-r.1	107947084	protein SPA1-RELATED 2
bna-r.1	106450516	protein SUPPRESSOR OF PHYA-105 1
bna-r.1	106439695	protein SPA1-RELATED 2
bna-r.1	106438276	protein SUPPRESSOR OF PHYA-105 1-like
sot-r.1	102593062	protein SUPPRESSOR OF PHYA-105 1-like
sot-r.1	102597285	protein SPA1-RELATED 2
cit-r.1	102621189	protein SPA1-RELATED 2
nta-r.1	107824806	protein SUPPRESSOR OF PHYA-105 1-like
nta-r.1	107800631	protein SPA1-RELATED 2
nta-r.1	107797204	protein SUPPRESSOR OF PHYA-105 1
cre-r.1	CHLRE_13g602700v5	uncharacterized protein

Top 50 coexpressed genes to 123147298 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123147298 (tae-r.2 coexpression data)

CoexMap"123147298"

[Cytoscape]

Annotation

functional annotation

KEGG

taes04712 [list] [network] Circadian rhythm - plant (179 genes)

GO BP

GO:0009640 [list] [network] photomorphogenesis

(40 genes)

IEA

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(16249 genes)

IEA

Protein

XP_044422468.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for XP_044422468.1)

Subcellular
localization
TargetP

other 9

(predict for XP_044422468.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123147298	tae-r.2 for 123069052	tae-r.2 for 123183200	hvu-r.1 for 123451067	bdi-r.1 for 100822627	osa-u.5 for 4339663	zma-u.5 for 103635349	zma-u.5 for 100384276	sbi-r.1 for 8074618	ath-u.5 for SPA1	ath-u.5 for SPA2	gma-u.5 for 100784300	gma-u.5 for 100778303	gma-u.5 for 100776980	sly-u.5 for 101249027	sly-u.5 for 101263834	bra-r.6 for 103866477	bra-r.6 for 103833904	bra-r.6 for 103858211	vvi-u.5 for 100256812	vvi-u.5 for 100257085	ppo-u.5 for 7479329	ppo-u.5 for 18097053	ppo-u.5 for 7492759	mtr-u.5 for 25500742	mtr-u.5 for 11437198	ghi-r.1 for 107909782	ghi-r.1 for 107924358	ghi-r.1 for 107947084	bna-r.1 for 106450516	bna-r.1 for 106439695	bna-r.1 for 106438276	sot-r.1 for 102593062	sot-r.1 for 102597285	cit-r.1 for 102621189	nta-r.1 for 107824806	nta-r.1 for 107800631	nta-r.1 for 107797204	cre-r.1 for CHLRE_13g602700v5

Ortholog

Ortholog ID: 3786

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

SPA1

SPA2

Function^*