ATTED-II : GeneCoexpression result

Species	Gene	Description
tae-r.2	123148208	uncharacterized LOC123148208
tae-r.2	123165500	uncharacterized LOC123165500
tae-r.2	123157198	uncharacterized LOC123157198
hvu-r.1	123408720	uncharacterized LOC123408720
bdi-r.1	100837239	uncharacterized LOC100837239
osa-u.5	4341480	nuclear pore complex protein NUP1
zma-u.5	100278385	uncharacterized LOC100278385
sbi-r.1	8065080	uncharacterized LOC8065080
ath-u.5	AT5G20200	nucleoporin-like protein
gma-u.5	100789027	nuclear pore complex protein NUP1
gma-u.5	100789007	nuclear pore complex protein NUP1
sly-u.5	101247836	nuclear pore complex protein NUP1
bra-r.6	103851334	nuclear pore complex protein NUP1
bra-r.6	103845700	nuclear pore complex protein NUP1
vvi-u.5	100261107	nuclear pore complex protein NUP1
ppo-u.5	7459889	nuclear pore complex protein NUP1
mtr-u.5	25497956	nuclear pore complex protein NUP1
mtr-u.5	25487141	nuclear pore complex protein NUP1
ghi-r.1	107907329	uncharacterized LOC107907329
ghi-r.1	107962608	nuclear pore complex protein NUP1
ghi-r.1	121203185	uncharacterized LOC121203185
bna-r.1	125579229	nuclear pore complex protein NUP1-like
bna-r.1	106439485	nuclear pore complex protein NUP1
bna-r.1	106380711	uncharacterized LOC106380711
sot-r.1	102606239	nuclear pore complex protein NUP1
cit-r.1	102610889	hypothetical protein
nta-r.1	107771845	uncharacterized LOC107771845
nta-r.1	107762631	uncharacterized LOC107762631

Annotation

functional annotation

KEGG

GO BP

GO:0071763 [list] [network] nuclear membrane organization

(21 genes)

IEA

GO CC

GO:0005635 [list] [network] nuclear envelope

(178 genes)

IEA

GO MF

Protein

XP_044423513.1 [sequence] [blastp]
XP_044423514.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, chlo 4	(predict for XP_044423513.1)
nucl 6, chlo 3	(predict for XP_044423514.1)

Subcellular
localization
TargetP

other 3, chlo 3	(predict for XP_044423513.1)
other 3, chlo 3	(predict for XP_044423514.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123148208	tae-r.2 for 123165500	tae-r.2 for 123157198	hvu-r.1 for 123408720	bdi-r.1 for 100837239	osa-u.5 for 4341480	zma-u.5 for 100278385	sbi-r.1 for 8065080	ath-u.5 for AT5G20200	gma-u.5 for 100789027	gma-u.5 for 100789007	sly-u.5 for 101247836	bra-r.6 for 103851334	bra-r.6 for 103845700	vvi-u.5 for 100261107	ppo-u.5 for 7459889	mtr-u.5 for 25497956	mtr-u.5 for 25487141	ghi-r.1 for 107907329	ghi-r.1 for 107962608	ghi-r.1 for 121203185	bna-r.1 for 125579229	bna-r.1 for 106439485	bna-r.1 for 106380711	sot-r.1 for 102606239	cit-r.1 for 102610889	nta-r.1 for 107771845	nta-r.1 for 107762631

Ortholog

Ortholog ID: 7343

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

uncharacterized LOC123148208

uncharacterized LOC123165500

uncharacterized LOC123157198

uncharacterized LOC123408720

uncharacterized LOC100837239

nuclear pore complex protein NUP1

uncharacterized LOC100278385

uncharacterized LOC8065080

nucleoporin-like protein

nuclear pore complex protein NUP1

uncharacterized LOC107907329

nuclear pore complex protein NUP1

uncharacterized LOC106380711

nuclear pore complex protein NUP1

hypothetical protein

uncharacterized LOC107771845

uncharacterized LOC107762631

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3
tae03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	3
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	3
ath03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	5
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03083	Polycomb repressive complex	2
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	2
ppo04136	Autophagy - other	2
ppo04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2
mtr00564	Glycerophospholipid metabolism	2
mtr00240	Pyrimidine metabolism	2
mtr00670	One carbon pool by folate	2
mtr00790	Folate biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03018	RNA degradation	2
ghi03040	Spliceosome	2
ghi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03018	RNA degradation	2
ghi03040	Spliceosome	2
ghi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00310	Lysine degradation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	3
cit03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00970	Aminoacyl-tRNA biosynthesis	3
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00970	Aminoacyl-tRNA biosynthesis	8
nta00860	Porphyrin metabolism	2
nta01240	Biosynthesis of cofactors	2
nta03008	Ribosome biogenesis in eukaryotes	2

Expression

Expression pattern

Entrez Gene ID^*

123148208

123165500

123157198

123408720

100837239

4341480

100278385

8065080

832143

100789027

100789007

101247836

103851334

103845700

100261107

7459889

25497956

25487141

107907329

107962608

107901305

106439485

106380711

106380709

102606239

102610889

107771845

107762631

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 123148208 (tae-r.2 coexpression data)

Top 50 enrichment test to 123148208 (tae-r.2 coexpression data)


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	1	1	1	1	1	1	2	1	2	1	1	2	3	3	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123148208 (tae-r.2 coexpression data)

Top 50 enrichment test to 123148208 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**