ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123157150	E3 ubiquitin-protein ligase SINAT5
tae-r.2	123069400	E3 ubiquitin-protein ligase SINAT5
tae-r.2	123043499	E3 ubiquitin-protein ligase SINAT5
tae-r.2	123118179	E3 ubiquitin-protein ligase SINAT5
hvu-r.1	123428647	E3 ubiquitin-protein ligase SINAT5-like
hvu-r.1	123424892	E3 ubiquitin-protein ligase DIS1
hvu-r.1	123407757	E3 ubiquitin-protein ligase SINAT5-like
bdi-r.1	100833057	E3 ubiquitin-protein ligase SINAT5
bdi-r.1	100826252	E3 ubiquitin-protein ligase SINAT5
bdi-r.1	100822426	E3 ubiquitin-protein ligase SINAT5
osa-u.5	9266295	E3 ubiquitin-protein ligase DIS1-like
osa-u.5	4327774	E3 ubiquitin-protein ligase SINAT5
osa-u.5	4344172	E3 ubiquitin-protein ligase DIS1-like
zma-u.5	100170241	uncharacterized LOC100170241
zma-u.5	100170242	uncharacterized LOC100170242
zma-u.5	100170243	uncharacterized LOC100170243
sbi-r.1	8058290	E3 ubiquitin-protein ligase SINAT5
sbi-r.1	8077759	E3 ubiquitin-protein ligase SINAT5
sbi-r.1	8080816	E3 ubiquitin-protein ligase SINAT3
ath-u.5	AT2G41980	Protein with RING/U-box and TRAF-like domain
ath-u.5	SINAT2	uncharacterized protein
ath-u.5	AT3G61790	Protein with RING/U-box and TRAF-like domain
gma-u.5	100813966	E3 ubiquitin-protein ligase SINAT2-like
gma-u.5	100810573	E3 ubiquitin-protein ligase SINAT3-like
gma-u.5	100793457	E3 ubiquitin-protein ligase DIS1
sly-u.5	SINA4	E3 ubiquitin ligase SINA4
sly-u.5	101253831	E3 ubiquitin ligase SINA2
sly-u.5	101264159	E3 ubiquitin ligase SINA6
bra-r.6	103858006	putative E3 ubiquitin-protein ligase SINAT1
bra-r.6	103867677	E3 ubiquitin-protein ligase SINAT4
bra-r.6	103830135	E3 ubiquitin-protein ligase SINAT2
vvi-u.5	100244678	E3 ubiquitin-protein ligase DIS1
vvi-u.5	100267231	E3 ubiquitin-protein ligase SINAT2
vvi-u.5	100252009	E3 ubiquitin-protein ligase SINAT5
ppo-u.5	7463600	E3 ubiquitin-protein ligase SINAT2
ppo-u.5	7476852	E3 ubiquitin-protein ligase DIS1
ppo-u.5	7479519	E3 ubiquitin-protein ligase SINAT2
mtr-u.5	25500674	E3 ubiquitin-protein ligase SINAT3
mtr-u.5	25499735	E3 ubiquitin-protein ligase SINAT5
mtr-u.5	25483549	E3 ubiquitin-protein ligase SINAT2
ghi-r.1	107908852	E3 ubiquitin-protein ligase SINAT5
ghi-r.1	107921233	E3 ubiquitin-protein ligase SINAT2
ghi-r.1	107916315	E3 ubiquitin-protein ligase DIS1
bna-r.1	106432129	E3 ubiquitin-protein ligase SINAT2
bna-r.1	106428173	putative E3 ubiquitin-protein ligase SINAT1
bna-r.1	106412203	E3 ubiquitin-protein ligase SINAT4
sot-r.1	102599941	E3 ubiquitin-protein ligase SINAT5-like
sot-r.1	102584192	E3 ubiquitin-protein ligase SINAT2-like
sot-r.1	102584453	E3 ubiquitin-protein ligase SINAT5-like
cit-r.1	102616953	E3 ubiquitin-protein ligase SINAT2
cit-r.1	102619672	E3 ubiquitin-protein ligase SINAT2
cit-r.1	102623798	E3 ubiquitin-protein ligase SINAT3
nta-r.1	107802688	E3 ubiquitin-protein ligase SINAT3-like
nta-r.1	107794971	E3 ubiquitin-protein ligase SINAT3
nta-r.1	107825750	putative E3 ubiquitin-protein ligase SINAT1

Top 50 coexpressed genes to 123157150 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123157150 (tae-r.2 coexpression data)

CoexMap"123157150"

[Cytoscape]

Annotation

functional annotation

KEGG

taes04120 [list] [network] Ubiquitin mediated proteolysis (715 genes)

GO BP

GO:0007275 [list] [network] multicellular organism development	(657 genes)	IEA
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process	(881 genes)	IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(13575 genes)

IEA

GO MF

GO:0061630 [list] [network] ubiquitin protein ligase activity	(667 genes)	IEA
GO:0008270 [list] [network] zinc ion binding	(2838 genes)	IEA
GO:0005515 [list] [network] protein binding	(16249 genes)	IEA

Protein

XP_044431329.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 3, E.R. 1, E.R._plas 1, mito 1, vacu 1, cysk 1

(predict for XP_044431329.1)

Subcellular
localization
TargetP

other 9

(predict for XP_044431329.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123157150	tae-r.2 for 123069400	tae-r.2 for 123043499	tae-r.2 for 123118179	hvu-r.1 for 123428647	hvu-r.1 for 123424892	hvu-r.1 for 123407757	bdi-r.1 for 100833057	bdi-r.1 for 100826252	bdi-r.1 for 100822426	osa-u.5 for 9266295	osa-u.5 for 4327774	osa-u.5 for 4344172	zma-u.5 for 100170241	zma-u.5 for 100170242	zma-u.5 for 100170243	sbi-r.1 for 8058290	sbi-r.1 for 8077759	sbi-r.1 for 8080816	ath-u.5 for AT2G41980	ath-u.5 for SINAT2	ath-u.5 for AT3G61790	gma-u.5 for 100813966	gma-u.5 for 100810573	gma-u.5 for 100793457	sly-u.5 for SINA4	sly-u.5 for 101253831	sly-u.5 for 101264159	bra-r.6 for 103858006	bra-r.6 for 103867677	bra-r.6 for 103830135	vvi-u.5 for 100244678	vvi-u.5 for 100267231	vvi-u.5 for 100252009	ppo-u.5 for 7463600	ppo-u.5 for 7476852	ppo-u.5 for 7479519	mtr-u.5 for 25500674	mtr-u.5 for 25499735	mtr-u.5 for 25483549	ghi-r.1 for 107908852	ghi-r.1 for 107921233	ghi-r.1 for 107916315	bna-r.1 for 106432129	bna-r.1 for 106428173	bna-r.1 for 106412203	sot-r.1 for 102599941	sot-r.1 for 102584192	sot-r.1 for 102584453	cit-r.1 for 102616953	cit-r.1 for 102619672	cit-r.1 for 102623798	nta-r.1 for 107802688	nta-r.1 for 107794971	nta-r.1 for 107825750

Ortholog

Ortholog ID: 342

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

SlSINA1

Function^*

E3 ubiquitin-protein ligase DIS1

E3 ubiquitin-protein ligase SINAT5

E3 ubiquitin-protein ligase SINAT5-like

E3 ubiquitin-protein ligase DIS1

E3 ubiquitin-protein ligase SINAT5-like

E3 ubiquitin-protein ligase SINAT5

E3 ubiquitin-protein ligase DIS1

E3 ubiquitin-protein ligase SINAT5

E3 ubiquitin-protein ligase SINAT3

uncharacterized LOC100170241

uncharacterized LOC100170242

uncharacterized LOC100170243

E3 ubiquitin-protein ligase SINAT5

E3 ubiquitin-protein ligase SINAT3

E3 ubiquitin-protein ligase SINAT5

Protein with RING/U-box and TRAF-like domain

TRAF-like superfamily protein

E3 ubiquitin-protein ligase SINAT3-like

E3 ubiquitin-protein ligase SINAT3

E3 ubiquitin-protein ligase SINAT2

E3 ubiquitin ligase SINA6

E3 ubiquitin ligase SINA3

E3 ubiquitin ligase SINA1

E3 ubiquitin-protein ligase SINAT4

E3 ubiquitin-protein ligase SINAT3

E3 ubiquitin-protein ligase SINAT5

SINA2p

SINA1p

E3 ubiquitin-protein ligase SINAT3

E3 ubiquitin-protein ligase SINAT2

E3 ubiquitin-protein ligase SINAT3

E3 ubiquitin-protein ligase SINAT5

E3 ubiquitin-protein ligase SINAT2

E3 ubiquitin-protein ligase DIS1

E3 ubiquitin-protein ligase SINAT2

E3 ubiquitin-protein ligase DIS1

putative E3 ubiquitin-protein ligase SINAT1

E3 ubiquitin-protein ligase SINAT5-like

E3 ubiquitin-protein ligase SINAT3-like

E3 ubiquitin-protein ligase SINAT2

E3 ubiquitin-protein ligase SINAT3

E3 ubiquitin-protein ligase DIS1-like

E3 ubiquitin-protein ligase SINAT3

E3 ubiquitin-protein ligase SINAT2

E3 ubiquitin-protein ligase SINAT5

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	8
tae03083	Polycomb repressive complex	5
tae04141	Protein processing in endoplasmic reticulum	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi04814	Motor proteins	2
bdi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2
osa03015	mRNA surveillance pathway	2
osa04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04130	SNARE interactions in vesicular transport	3
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	3
zma04712	Circadian rhythm - plant	2
zma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00770	Pantothenate and CoA biosynthesis	2
gma01240	Biosynthesis of cofactors	2
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	3
sly04145	Phagosome	2
sly04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2
sly04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	5
sly04016	MAPK signaling pathway - plant	3
sly03013	Nucleocytoplasmic transport	2
sly03015	mRNA surveillance pathway	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3
bra04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	2
vvi04142	Lysosome	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	5
mtr03083	Polycomb repressive complex	2
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01230	Biosynthesis of amino acids	2
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	3
bna00220	Arginine biosynthesis	2
bna00230	Purine metabolism	2
bna03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	3
bna00220	Arginine biosynthesis	2
bna00230	Purine metabolism	2
bna03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	3
bna00280	Valine, leucine and isoleucine degradation	2
bna00640	Propanoate metabolism	2
bna00785	Lipoic acid metabolism	2
bna01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00920	Sulfur metabolism	4
sot01320	Sulfur cycle	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00480	Glutathione metabolism	4
sot04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	4
nta00061	Fatty acid biosynthesis	2
nta00280	Valine, leucine and isoleucine degradation	2
nta01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	5
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	4
nta04075	Plant hormone signal transduction	2
nta04120	Ubiquitin mediated proteolysis	2
nta00310	Lysine degradation	2
nta00051	Fructose and mannose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

123043860

123165457

123077898

123428647

123424892

123443282

100833057

100826252

100832893

4327774

4329066

4338181

100170241

100170242

100170243

8058290

8080816

8073139

818798

825352

835417

100810573

100792687

100500061

101264159

101246723

101263446

103867677

103830327

103862812

100252009

100233085

100233084

7486772

7455750

25500674

25499735

25483549

107916315

107916308

107940377

106428173

106388271

111215125

102599941

102602007

102602506

102619672

102623798

102624862

107794971

107773987

107784733

The preparation time of this page was 2.1 [sec].


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123157150 (tae-r.2 coexpression data)

Top 50 enrichment test to 123157150 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**