ATTED-II : GeneCoexpression result

Species	Gene	Description
tae-r.2	123181828	28 kDa ribonucleoprotein, chloroplastic
tae-r.2	123063431	heterogeneous nuclear ribonucleoproteins A2/B1
tae-r.2	123072440	RNA-binding protein Musashi homolog 2
tae-r.2	123080664	RNA-binding protein Musashi homolog 2
bdi-r.1	100845489	heterogeneous nuclear ribonucleoprotein A2 homolog 2
osa-u.5	4325826	heterogeneous nuclear ribonucleoprotein 1
zma-u.5	100193201	heterogeneous nuclear ribonucleoprotein 27C
zma-u.5	100285224	heterogeneous nuclear ribonucleoprotein 27C
sbi-r.1	110433925	RNA-binding protein Musashi homolog 2
ath-u.5	AT4G36960	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100808084	heterogeneous nuclear ribonucleoprotein 1
gma-u.5	100795240	DAZ-associated protein 1
sly-u.5	101267666	uncharacterized LOC101267666
bra-r.6	103862517	heterogeneous nuclear ribonucleoprotein A/B
vvi-u.5	100247389	uncharacterized LOC100247389
ppo-u.5	7489734	uncharacterized LOC7489734
ppo-u.5	7483111	uncharacterized LOC7483111
mtr-u.5	11410929	RNA-binding protein Musashi homolog 2
mtr-u.5	120577404	RNA-binding protein Musashi homolog 2
ghi-r.1	107945722	DAZ-associated protein 1
ghi-r.1	107897845	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107913246	DAZ-associated protein 1
bna-r.1	106445512	RNA-binding protein Musashi homolog 2
bna-r.1	106410704	RNA-binding protein Musashi homolog 2
sot-r.1	102591610	heterogeneous nuclear ribonucleoprotein D-like
cit-r.1	102620595	uncharacterized LOC102620595
nta-r.1	107778564	heterogeneous nuclear ribonucleoprotein 1
nta-r.1	107788630	heterogeneous nuclear ribonucleoprotein 1
cre-r.1	CHLRE_16g662702v5	uncharacterized protein

Annotation

functional annotation

KEGG

taes03015 [list] [network] mRNA surveillance pathway (388 genes)

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(4004 genes)

IEA

Protein

XP_044450150.1 [sequence] [blastp]
XP_044450151.1 [sequence] [blastp]
XP_044450152.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, nucl 3	(predict for XP_044450150.1)
cyto 7, nucl 2	(predict for XP_044450151.1)
nucl 4, cysk 3, mito 1, pero 1, cysk_plas 1	(predict for XP_044450152.1)

Subcellular
localization
TargetP

other 8	(predict for XP_044450150.1)
other 8	(predict for XP_044450151.1)
other 7	(predict for XP_044450152.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123181828	tae-r.2 for 123063431	tae-r.2 for 123072440	tae-r.2 for 123080664	bdi-r.1 for 100845489	osa-u.5 for 4325826	zma-u.5 for 100193201	zma-u.5 for 100285224	sbi-r.1 for 110433925	ath-u.5 for AT4G36960	gma-u.5 for 100808084	gma-u.5 for 100795240	sly-u.5 for 101267666	bra-r.6 for 103862517	vvi-u.5 for 100247389	ppo-u.5 for 7489734	ppo-u.5 for 7483111	mtr-u.5 for 11410929	mtr-u.5 for 120577404	ghi-r.1 for 107945722	ghi-r.1 for 107897845	ghi-r.1 for 107913246	bna-r.1 for 106445512	bna-r.1 for 106410704	sot-r.1 for 102591610	cit-r.1 for 102620595	nta-r.1 for 107778564	nta-r.1 for 107788630	cre-r.1 for CHLRE_16g662702v5

Ortholog

Ortholog ID: 6948

Species

tae

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

28 kDa ribonucleoprotein, chloroplastic

heterogeneous nuclear ribonucleoproteins A2/B1

28 kDa ribonucleoprotein, chloroplastic

heterogeneous nuclear ribonucleoprotein A2 homolog 2

heterogeneous nuclear ribonucleoprotein 1

heterogeneous nuclear ribonucleoprotein 27C

RNA-binding protein Musashi homolog 2

RNA-binding (RRM/RBD/RNP motifs) family protein

heterogeneous nuclear ribonucleoprotein 1

DAZ-associated protein 1

uncharacterized LOC101267666

heterogeneous nuclear ribonucleoprotein A/B

uncharacterized LOC100247389

uncharacterized LOC7489734

uncharacterized LOC7483111

RNA-binding protein Musashi homolog 2

heterogeneous nuclear ribonucleoprotein 1

DAZ-associated protein 1

heterogeneous nuclear ribonucleoprotein A2 homolog 2

RNA-binding protein Musashi homolog 2

heterogeneous nuclear ribonucleoprotein D-like

uncharacterized LOC102620595

heterogeneous nuclear ribonucleoprotein 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	8
tae04382	Cornified envelope formation	3
tae03013	Nucleocytoplasmic transport	3
tae03040	Spliceosome	3
tae00330	Arginine and proline metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	6
tae03015	mRNA surveillance pathway	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	8
tae04382	Cornified envelope formation	3
tae03013	Nucleocytoplasmic transport	3
tae03040	Spliceosome	3
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	4
bdi03040	Spliceosome	3
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03013	Nucleocytoplasmic transport	2
bdi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03022	Basal transcription factors	2
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3
zma03008	Ribosome biogenesis in eukaryotes	2
zma04712	Circadian rhythm - plant	2
zma03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	4
zma03040	Spliceosome	4
zma03013	Nucleocytoplasmic transport	2
zma03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	8
sbi03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03250	Viral life cycle - HIV-1	3
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	8
gma03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	8
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4
vvi04141	Protein processing in endoplasmic reticulum	2
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo03083	Polycomb repressive complex	3
ppo03082	ATP-dependent chromatin remodeling	2
ppo04141	Protein processing in endoplasmic reticulum	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	5
ppo03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	7
mtr03015	mRNA surveillance pathway	4
mtr03010	Ribosome	2
mtr03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	6
mtr00510	N-Glycan biosynthesis	3
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	5
nta03013	Nucleocytoplasmic transport	3
nta03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	5
nta03013	Nucleocytoplasmic transport	3
nta03040	Spliceosome	3

Expression

Expression pattern

Entrez Gene ID^*

123181828

123063431

123130390

100845489

4325826

100193201

100285224

110433925

829850

100808084

100795240

101267666

103862517

100247389

7489734

7483111

11410929

120577404

107897845

107913246

107925197

106445512

106410704

102591610

102620595

107778564

107788630

5723512

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 123181828 (tae-r.2 coexpression data)

Top 50 enrichment test to 123181828 (tae-r.2 coexpression data)


Species	tae	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre	hvu
Paralog	4	1	1	2	1	1	2	1	1	1	2	2	3	2	1	1	2	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123181828 (tae-r.2 coexpression data)

Top 50 enrichment test to 123181828 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**