ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123183330	uncharacterized LOC123183330
tae-r.2	123149131	uncharacterized LOC123149131
tae-r.2	123061417	uncharacterized LOC123061417
tae-r.2	123070068	uncharacterized LOC123070068
hvu-r.1	123452364	uncharacterized LOC123452364
hvu-r.1	123443842	uncharacterized LOC123443842
bdi-r.1	100841225	uncharacterized LOC100841225
bdi-r.1	100824063	transmembrane protein 33 homolog
osa-u.5	4324102	uncharacterized LOC4324102
osa-u.5	4339776	uncharacterized LOC4339776
zma-u.5	100276645	uncharacterized LOC100276645
zma-u.5	100216801	uncharacterized LOC100216801
sbi-r.1	8065311	uncharacterized LOC8065311
sbi-r.1	8082510	uncharacterized LOC8082510
ath-u.5	AT3G02420	dihydroflavonol 4-reductase/flavanone protein
gma-u.5	100794639	uncharacterized LOC100794639
gma-u.5	100789872	uncharacterized LOC100789872
sly-u.5	101256070	uncharacterized LOC101256070
bra-r.6	103870915	uncharacterized LOC103870915
vvi-u.5	100256561	uncharacterized LOC100256561
ppo-u.5	18107415	uncharacterized LOC18107415
ppo-u.5	7494557	uncharacterized LOC7494557
mtr-u.5	25495542	uncharacterized LOC25495542
ghi-r.1	121204908	uncharacterized LOC121204908
ghi-r.1	107954817	transmembrane protein 33 homolog
ghi-r.1	107953954	transmembrane protein 33 homolog
bna-r.1	125587575	uncharacterized LOC125587575
bna-r.1	106382864	uncharacterized LOC106382864
bna-r.1	106352164	uncharacterized LOC106352164
sot-r.1	102582855	transmembrane protein 33 homolog
sot-r.1	102584544	transmembrane protein 33 homolog
cit-r.1	102627174	hypothetical protein
nta-r.1	107766478	uncharacterized LOC107766478
nta-r.1	107785402	uncharacterized LOC107785402
nta-r.1	107801018	uncharacterized LOC107801018
cre-r.1	CHLRE_02g099650v5	uncharacterized protein

Top 50 coexpressed genes to 123183330 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123183330 (tae-r.2 coexpression data)

CoexMap"123183330"

[Cytoscape]

Annotation

functional annotation

KEGG

taes03013 [list] [network] Nucleocytoplasmic transport (365 genes)

GO BP

GO:0071786 [list] [network] endoplasmic reticulum tubular network organization	(20 genes)	IEA
GO:0061024 [list] [network] membrane organization	(518 genes)	IEA

GO CC

GO:0005783 [list] [network] endoplasmic reticulum	(1516 genes)	IEA
GO:0016020 [list] [network] membrane	(10843 genes)	IEA

GO MF

Protein

XP_044452052.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 3, E.R._plas 2, chlo 1, nucl 1, cyto 1, mito 1, cyto_nucl 1, chlo_mito 1

(predict for XP_044452052.1)

Subcellular
localization
TargetP

other 9

(predict for XP_044452052.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123183330	tae-r.2 for 123149131	tae-r.2 for 123061417	tae-r.2 for 123070068	hvu-r.1 for 123452364	hvu-r.1 for 123443842	bdi-r.1 for 100841225	bdi-r.1 for 100824063	osa-u.5 for 4324102	osa-u.5 for 4339776	zma-u.5 for 100276645	zma-u.5 for 100216801	sbi-r.1 for 8065311	sbi-r.1 for 8082510	ath-u.5 for AT3G02420	gma-u.5 for 100794639	gma-u.5 for 100789872	sly-u.5 for 101256070	bra-r.6 for 103870915	vvi-u.5 for 100256561	ppo-u.5 for 18107415	ppo-u.5 for 7494557	mtr-u.5 for 25495542	ghi-r.1 for 121204908	ghi-r.1 for 107954817	ghi-r.1 for 107953954	bna-r.1 for 125587575	bna-r.1 for 106382864	bna-r.1 for 106352164	sot-r.1 for 102582855	sot-r.1 for 102584544	cit-r.1 for 102627174	nta-r.1 for 107766478	nta-r.1 for 107785402	nta-r.1 for 107801018	cre-r.1 for CHLRE_02g099650v5

Ortholog

Ortholog ID: 4080

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

uncharacterized LOC123149131

uncharacterized LOC123070068

uncharacterized LOC123070312

uncharacterized LOC123443842

uncharacterized LOC100841225

transmembrane protein 33 homolog

uncharacterized LOC4324102

uncharacterized LOC4339776

uncharacterized LOC100276645

uncharacterized LOC100216801

uncharacterized LOC8065311

uncharacterized LOC8082510

dihydroflavonol 4-reductase/flavanone protein

uncharacterized LOC100794639

uncharacterized LOC100789872

uncharacterized LOC101256070

uncharacterized LOC103870915

uncharacterized LOC100256561

uncharacterized LOC18107415

uncharacterized LOC7494557

uncharacterized LOC25495542

transmembrane protein 33 homolog

uncharacterized LOC125587575

uncharacterized LOC106382864

uncharacterized LOC106352164

transmembrane protein 33 homolog

hypothetical protein

uncharacterized LOC107785402

uncharacterized LOC107801018

uncharacterized LOC107799686

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	9
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	4
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2
hvu03013	Nucleocytoplasmic transport	2
hvu03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	2
bdi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	2
osa04141	Protein processing in endoplasmic reticulum	2
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	3
zma04141	Protein processing in endoplasmic reticulum	3
zma03013	Nucleocytoplasmic transport	2
zma03060	Protein export	2
zma04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00510	N-Glycan biosynthesis	3
ath00513	Various types of N-glycan biosynthesis	3
ath04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	7
gma03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00710	Carbon fixation by Calvin cycle	6
gma01200	Carbon metabolism	6
gma00020	Citrate cycle (TCA cycle)	3
gma00270	Cysteine and methionine metabolism	3
gma00566	Sulfoquinovose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	3
sly04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00020	Citrate cycle (TCA cycle)	3
bra01200	Carbon metabolism	3
bra00190	Oxidative phosphorylation	3
bra00510	N-Glycan biosynthesis	2
bra00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	3
vvi01200	Carbon metabolism	3
vvi04141	Protein processing in endoplasmic reticulum	2
vvi00785	Lipoic acid metabolism	2
vvi00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	4
ppo03013	Nucleocytoplasmic transport	3
ppo00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00561	Glycerolipid metabolism	2
ppo00564	Glycerophospholipid metabolism	2
ppo00510	N-Glycan biosynthesis	2
ppo00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01230	Biosynthesis of amino acids	2
mtr01240	Biosynthesis of cofactors	2
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	2
ghi03013	Nucleocytoplasmic transport	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00561	Glycerolipid metabolism	4
bna00564	Glycerophospholipid metabolism	4
bna03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00561	Glycerolipid metabolism	4
bna00564	Glycerophospholipid metabolism	4
bna03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00561	Glycerolipid metabolism	4
bna00564	Glycerophospholipid metabolism	4
bna03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	3
sot03010	Ribosome	2
sot00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	11
sot00510	N-Glycan biosynthesis	5
sot00513	Various types of N-glycan biosynthesis	4
sot03060	Protein export	3
sot04145	Phagosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	3
cit03050	Proteasome	2
cit01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2
nta03013	Nucleocytoplasmic transport	2
nta00052	Galactose metabolism	2
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta00270	Cysteine and methionine metabolism	2
nta00330	Arginine and proline metabolism	2
nta00480	Glutathione metabolism	2
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	4
nta03015	mRNA surveillance pathway	2
nta03040	Spliceosome	2
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	6

Expression

Expression pattern

Entrez Gene ID^*

123149131

123070068

123070312

123443842

100841225

100824063

4324102

4339776

100276645

100216801

8065311

8082510

821152

100794639

100789872

101256070

103870915

100256561

18107415

7494557

25495542

107954817

107953954

107916863

125587575

106382864

106352164

102582855

102584544

102627174

107785402

107801018

107799686

66052409

The preparation time of this page was 0.2 [sec].


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	2	2	2	2	2	1	2	1	1	1	2	1	3	3	2	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123183330 (tae-r.2 coexpression data)

Top 50 enrichment test to 123183330 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**