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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123188489   regulator of nonsense transcripts 1 homolog 
 tae-r.2   123044827   regulator of nonsense transcripts 1 homolog 
 tae-r.2   123052735   regulator of nonsense transcripts 1 homolog 
 hvu-r.1   123426134   regulator of nonsense transcripts 1 homolog 
 bdi-r.1   100838876   regulator of nonsense transcripts 1 homolog 
 osa-u.5   4343292   regulator of nonsense transcripts 1 homolog 
 zma-u.5   100383288   uncharacterized LOC100383288 
 zma-u.5   100304236   uncharacterized LOC100304236 
 sbi-r.1   8077469   regulator of nonsense transcripts 1 homolog 
 ath-u.5   LBA1   RNA helicase 
 gma-u.5   100795594   regulator of nonsense transcripts 1 homolog 
 gma-u.5   100793750   regulator of nonsense transcripts 1 homolog 
 sly-u.5   101258879   regulator of nonsense transcripts 1 homolog 
 sly-u.5   101257199   regulator of nonsense transcripts 1 homolog 
 bra-r.6   103853766   regulator of nonsense transcripts 1 homolog 
 vvi-u.5   100264343   regulator of nonsense transcripts 1 homolog 
 ppo-u.5   18096919   regulator of nonsense transcripts 1 homolog 
 ppo-u.5   18094225   regulator of nonsense transcripts 1 homolog 
 mtr-u.5   11438910   regulator of nonsense transcripts 1 homolog 
 ghi-r.1   107886389   regulator of nonsense transcripts 1 homolog 
 ghi-r.1   107896538   regulator of nonsense transcripts 1 homolog 
 ghi-r.1   107919919   regulator of nonsense transcripts 1 homolog 
 bna-r.1   106400530   regulator of nonsense transcripts 1 homolog 
 bna-r.1   106378491   regulator of nonsense transcripts 1 homolog 
 sot-r.1   102597499   regulator of nonsense transcripts 1 homolog 
 sot-r.1   102580894   regulator of nonsense transcripts 1 homolog 
 cit-r.1   102615436   regulator of nonsense transcripts 1 homolog 
 nta-r.1   107813559   regulator of nonsense transcripts 1 homolog 
 nta-r.1   107803906   regulator of nonsense transcripts 1 homolog 
 nta-r.1   107799096   regulator of nonsense transcripts 1 homolog 
 cre-r.1   CHLRE_02g092500v5   uncharacterized protein 

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Top 50 coexpressed genes to 123188489 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123188489 (tae-r.2 coexpression data)

CoexMap"123188489"


taeLOC123188489 | Entrez gene ID : 123188489    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 1 2 1 1 2 2 1 1 2 1 3 2 2 1 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes03013 [list] [network] Nucleocytoplasmic transport (365 genes)
taes03015 [list] [network] mRNA surveillance pathway (388 genes)
GO BP
GO:0000184 [list] [network] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  (38 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (13575 genes)  IEA  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (186 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (2838 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (4004 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (7858 genes)  IEA  
Protein XP_044456572.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  plas 1,  vacu 1,  pero 1,  cyto_pero 1,  cyto_plas 1  (predict for XP_044456572.1)
Subcellular
localization
TargetP
other 8  (predict for XP_044456572.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123188489
tae-r.2
for
123044827
tae-r.2
for
123052735
hvu-r.1
for
123426134
bdi-r.1
for
100838876
osa-u.5
for
4343292
zma-u.5
for
100383288
zma-u.5
for
100304236
sbi-r.1
for
8077469
ath-u.5
for
LBA1
gma-u.5
for
100795594
gma-u.5
for
100793750
sly-u.5
for
101258879
sly-u.5
for
101257199
bra-r.6
for
103853766
vvi-u.5
for
100264343
ppo-u.5
for
18096919
ppo-u.5
for
18094225
mtr-u.5
for
11438910
ghi-r.1
for
107886389
ghi-r.1
for
107896538
ghi-r.1
for
107919919
bna-r.1
for
106400530
bna-r.1
for
106378491
sot-r.1
for
102597499
sot-r.1
for
102580894
cit-r.1
for
102615436
nta-r.1
for
107813559
nta-r.1
for
107803906
nta-r.1
for
107799096
cre-r.1
for
CHLRE_02g092500v5


Ortholog ID: 6099
Species tae tae tae hvu bdi osa zma zma sbi ath gma gma sly sly bra vvi ppo ppo mtr ghi ghi ghi bna bna sot sot cit nta nta nta cre
Symbol LOC123188489 LOC123044827 LOC123052735 LOC123426134 LOC100838876 LOC4343292 LOC100383288 LOC100304236 LOC8077469 LBA1 LOC100795594 LOC100793750 LOC101258879 LOC101257199 LOC103853766 LOC100264343 LOC18096919 LOC18094225 LOC11438910 LOC107886389 LOC107919919 LOC107933728 LOC106400530 LOC106378491 LOC102597499 LOC102580894 LOC102615436 LOC107813559 LOC107803906 LOC107799096 CHLRE_02g092500v5
Function* regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog uncharacterized LOC100383288 uncharacterized LOC100304236 regulator of nonsense transcripts 1 homolog RNA helicase regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog regulator of nonsense transcripts 1 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03013 Nucleocytoplasmic transport 3
tae04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03013 Nucleocytoplasmic transport 3
tae04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03013 Nucleocytoplasmic transport 3
tae03018 RNA degradation 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 3
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 5
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 3
zma03015 mRNA surveillance pathway 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 4
sbi03013 Nucleocytoplasmic transport 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03040 Spliceosome 2
ath03015 mRNA surveillance pathway 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma04136 Autophagy - other 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 4
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 4
vvi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 4
ghi03018 RNA degradation 3
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 4
ghi03018 RNA degradation 3
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 4
ghi03018 RNA degradation 3
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 8
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 8
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04148 Efferocytosis 3
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
cit04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123188489 123044827 123052735 123426134 100838876 4343292 100383288 100304236 8077469 834747 100795594 100793750 101258879 101257199 103853766 100264343 18096919 18094225 11438910 107886389 107919919 107933728 106400530 106378491 102597499 102580894 102615436 107813559 107803906 107799096 5727501
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