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Orthologous genes in OrthoFinder**

Species Gene Description
 hvu-r.1   123396043   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic-like 
 hvu-r.1   123425623   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic-like 
 hvu-r.1   123425876   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic-like 
 tae-r.2   123119323   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 tae-r.2   123110281   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 tae-r.2   123102148   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 bdi-r.1   100821428   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 osa-u.5   4352083   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 zma-u.5   100193292   uncharacterized LOC100193292 
 sbi-r.1   8084746   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 ath-u.5   CRB   chloroplast RNA binding protein 
 gma-u.5   100799721   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 gma-u.5   100791076   uncharacterized LOC100791076 
 sly-u.5   101253094   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 bra-r.6   103871660   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 vvi-u.5   100261308   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 ppo-u.5   7478886   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 mtr-u.5   25499634   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 ghi-r.1   107927243   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 ghi-r.1   107886441   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 bna-r.1   106346279   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 bna-r.1   106415409   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 sot-r.1   102598488   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 cit-r.1   102608586   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 nta-r.1   107782473   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 nta-r.1   107779937   chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 
 cre-r.1   CHLRE_10g435800v5   uncharacterized protein 

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Top 50 coexpressed genes to 123396043 (hvu-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123396043 (hvu-r.1 coexpression data)

CoexMap"123396043"


hvuLOC123396043 | Entrez gene ID : 123396043    
Species hvu tae bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 3 1 1 1 1 1 2 1 1 1 1 1 2 2 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006364 [list] [network] rRNA processing  (223 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (938 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1359 genes)  IEA  
Protein XP_044947007.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  vacu 2  (predict for XP_044947007.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_044947007.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

hvu-r.1
for
123396043
hvu-r.1
for
123425623
hvu-r.1
for
123425876
tae-r.2
for
123119323
tae-r.2
for
123110281
tae-r.2
for
123102148
bdi-r.1
for
100821428
osa-u.5
for
4352083
zma-u.5
for
100193292
sbi-r.1
for
8084746
ath-u.5
for
CRB
gma-u.5
for
100799721
gma-u.5
for
100791076
sly-u.5
for
101253094
bra-r.6
for
103871660
vvi-u.5
for
100261308
ppo-u.5
for
7478886
mtr-u.5
for
25499634
ghi-r.1
for
107927243
ghi-r.1
for
107886441
bna-r.1
for
106346279
bna-r.1
for
106415409
sot-r.1
for
102598488
cit-r.1
for
102608586
nta-r.1
for
107782473
nta-r.1
for
107779937
cre-r.1
for
CHLRE_10g435800v5


Ortholog ID: 8225
Species hvu hvu tae tae tae bdi osa zma sbi ath gma gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC123425623 LOC123425876 LOC123119323 LOC123110281 LOC123102148 LOC100821428 LOC4352083 LOC100193292 LOC8084746 CRB LOC100799721 LOC100791076 LOC101253094 LOC103871660 LOC100261308 LOC7478886 LOC25499634 LOC107927243 LOC107886441 LOC106346279 LOC106415409 LOC102598488 LOC102608586 LOC107782473 LOC107779937 CHLRE_10g435800v5
Function* chloroplast stem-loop binding protein of 41 kDa b, chloroplastic-like chloroplast stem-loop binding protein of 41 kDa b, chloroplastic-like chloroplast stem-loop binding protein of 41 kDa b, chloroplastic chloroplast stem-loop binding protein of 41 kDa b, chloroplastic chloroplast stem-loop binding protein of 41 kDa b, chloroplastic chloroplast stem-loop binding protein of 41 kDa b, chloroplastic chloroplast stem-loop binding protein of 41 kDa b, chloroplastic uncharacterized LOC100193292 chloroplast stem-loop binding protein of 41 kDa b, chloroplastic chloroplast RNA binding protein chloroplast stem-loop binding protein of 41 kDa b, chloroplastic uncharacterized LOC100791076 chloroplast stem-loop binding protein of 41 kDa b, chloroplastic chloroplast stem-loop binding protein of 41 kDa b, chloroplastic chloroplast stem-loop binding protein of 41 kDa b, chloroplastic chloroplast stem-loop binding protein of 41 kDa b, chloroplastic chloroplast stem-loop binding protein of 41 kDa b, chloroplastic chloroplast stem-loop binding protein of 41 kDa b, chloroplastic chloroplast stem-loop binding protein of 41 kDa b, chloroplastic chloroplast stem-loop binding protein of 41 kDa b, chloroplastic chloroplast stem-loop binding protein of 41 kDa b, chloroplastic chloroplast stem-loop binding protein of 41 kDa b, chloroplastic chloroplast stem-loop binding protein of 41 kDa b, chloroplastic chloroplast stem-loop binding protein of 41 kDa b, chloroplastic chloroplast stem-loop binding protein of 41 kDa b, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
hvu00630 Glyoxylate and dicarboxylate metabolism 2
hvu01200 Carbon metabolism 2
hvu00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 6
tae00630 Glyoxylate and dicarboxylate metabolism 4
tae01200 Carbon metabolism 4
tae00220 Arginine biosynthesis 3
tae00250 Alanine, aspartate and glutamate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 6
tae00220 Arginine biosynthesis 3
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
tae00910 Nitrogen metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 7
tae00710 Carbon fixation by Calvin cycle 5
tae01200 Carbon metabolism 5
tae00010 Glycolysis / Gluconeogenesis 3
tae00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 7
bdi00710 Carbon fixation by Calvin cycle 5
bdi00630 Glyoxylate and dicarboxylate metabolism 4
bdi01230 Biosynthesis of amino acids 3
bdi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 9
osa00710 Carbon fixation by Calvin cycle 8
osa00630 Glyoxylate and dicarboxylate metabolism 3
osa00195 Photosynthesis 2
osa00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 7
zma00710 Carbon fixation by Calvin cycle 5
zma00630 Glyoxylate and dicarboxylate metabolism 3
zma00010 Glycolysis / Gluconeogenesis 2
zma00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 11
ath00710 Carbon fixation by Calvin cycle 7
ath00630 Glyoxylate and dicarboxylate metabolism 6
ath00260 Glycine, serine and threonine metabolism 3
ath00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 10
gma00710 Carbon fixation by Calvin cycle 8
gma00010 Glycolysis / Gluconeogenesis 2
gma00030 Pentose phosphate pathway 2
gma00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 9
gma01200 Carbon metabolism 9
gma00195 Photosynthesis 4
gma00030 Pentose phosphate pathway 4
gma01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 5
sly00710 Carbon fixation by Calvin cycle 4
sly00195 Photosynthesis 3
sly00010 Glycolysis / Gluconeogenesis 2
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 7
bra00630 Glyoxylate and dicarboxylate metabolism 5
bra00710 Carbon fixation by Calvin cycle 3
bra00260 Glycine, serine and threonine metabolism 3
bra00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 4
vvi01200 Carbon metabolism 3
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 10
mtr00710 Carbon fixation by Calvin cycle 8
mtr00630 Glyoxylate and dicarboxylate metabolism 5
mtr00010 Glycolysis / Gluconeogenesis 3
mtr00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 6
ghi00010 Glycolysis / Gluconeogenesis 4
ghi00710 Carbon fixation by Calvin cycle 4
ghi00190 Oxidative phosphorylation 2
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 6
ghi00010 Glycolysis / Gluconeogenesis 4
ghi00710 Carbon fixation by Calvin cycle 4
ghi00190 Oxidative phosphorylation 2
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00710 Carbon fixation by Calvin cycle 6
bna01200 Carbon metabolism 6
bna00630 Glyoxylate and dicarboxylate metabolism 4
bna00910 Nitrogen metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01200 Carbon metabolism 7
bna00710 Carbon fixation by Calvin cycle 5
bna00260 Glycine, serine and threonine metabolism 2
bna00270 Cysteine and methionine metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 6
sot00710 Carbon fixation by Calvin cycle 4
sot00630 Glyoxylate and dicarboxylate metabolism 4
sot00195 Photosynthesis 3
sot00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 6
cit00630 Glyoxylate and dicarboxylate metabolism 4
cit00710 Carbon fixation by Calvin cycle 3
cit00260 Glycine, serine and threonine metabolism 2
cit00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 4
cre00710 Carbon fixation by Calvin cycle 3
cre00630 Glyoxylate and dicarboxylate metabolism 2
cre00061 Fatty acid biosynthesis 2
cre01212 Fatty acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123425623 123425876 123119323 123110281 123102148 100821428 4352083 100193292 8084746 837455 100799721 100791076 101253094 103871660 100261308 7478886 25499634 107927243 107886441 106346279 106415409 102598488 102608586 107782473 107779937 5715993
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