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Orthologous genes in OrthoFinder**

Species Gene Description
 hvu-r.1   123398613   diaminopimelate epimerase, chloroplastic 
 osa-u.5   4352558   diaminopimelate epimerase, chloroplastic-like 
 zma-u.5   100191234   Diaminopimelate epimerase chloroplastic 
 zma-u.5   100273435   Diaminopimelate epimerase chloroplastic 
 ath-u.5   AT3G53580   diaminopimelate epimerase family protein 
 gma-u.5   100784731   diaminopimelate epimerase, chloroplastic 
 gma-u.5   100807528   diaminopimelate epimerase, chloroplastic-like 
 sly-u.5   101246955   diaminopimelate epimerase, chloroplastic 
 vvi-u.5   100241380   diaminopimelate epimerase, chloroplastic 
 ppo-u.5   7460375   diaminopimelate epimerase, chloroplastic 
 ppo-u.5   7487330   diaminopimelate epimerase, chloroplastic 
 mtr-u.5   25499307   diaminopimelate epimerase, chloroplastic 
 mtr-u.5   11433124   diaminopimelate epimerase, chloroplastic 

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Top 50 coexpressed genes to 123398613 (hvu-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123398613 (hvu-r.1 coexpression data)

CoexMap"123398613"


hvuLOC123398613 | Entrez gene ID : 123398613    
Species hvu osa zma ath gma sly vvi ppo mtr sbi nta bra cre cit bdi sot tae bna ghi
Paralog 1 1 2 1 2 1 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG hvg00300 [list] [network] Lysine biosynthesis (15 genes)
hvg00470 [list] [network] D-Amino acid metabolism (5 genes)
hvg01230 [list] [network] Biosynthesis of amino acids (224 genes)
GO BP
GO:0009089 [list] [network] lysine biosynthetic process via diaminopimelate  (13 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (938 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5514 genes)  IEA  
GO MF
GO:0008837 [list] [network] diaminopimelate epimerase activity  (1 genes)  IEA  
Protein XP_044949002.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_044949002.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_044949002.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

hvu-r.1
for
123398613

.
osa-u.5
for
4352558

.
zma-u.5
for
100191234

.
zma-u.5
for
100273435

.
ath-u.5
for
AT3G53580

.
gma-u.5
for
100784731

.
gma-u.5
for
100807528

.
sly-u.5
for
101246955

.
vvi-u.5
for
100241380

.
ppo-u.5
for
7460375

.
ppo-u.5
for
7487330

.
mtr-u.5
for
25499307

.
mtr-u.5
for
11433124

.


Ortholog ID: 5532
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol AT3G53580 LOC100784731 LOC100807528 LOC101246955 LOC4352558 LOC100191234 LOC103841284 LOC103867199 LOC100241380 LOC7460375 LOC7487330 LOC11433124 LOC25499307 LOC123110705 LOC123102524 LOC123398613 LOC107948874 LOC107899279 LOC106390801 LOC106451032 CHLRE_05g237400v5 LOC110429778 LOC8068862 LOC102588220 LOC102618536 LOC100842496 LOC107779873 LOC107796792
Function* diaminopimelate epimerase family protein diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic-like diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic-like Diaminopimelate epimerase chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic-like diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic-like diaminopimelate epimerase, chloroplastic-like uncharacterized protein diaminopimelate epimerase, chloroplastic-like diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic diaminopimelate epimerase, chloroplastic-like diaminopimelate epimerase, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 12
ath00300 Lysine biosynthesis 5
ath01240 Biosynthesis of cofactors 4
ath01210 2-Oxocarboxylic acid metabolism 4
ath00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 4
gma03082 ATP-dependent chromatin remodeling 2
gma00020 Citrate cycle (TCA cycle) 2
gma00190 Oxidative phosphorylation 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 4
gma00190 Oxidative phosphorylation 3
gma00020 Citrate cycle (TCA cycle) 2
gma01200 Carbon metabolism 2
gma00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 11
sly01210 2-Oxocarboxylic acid metabolism 4
sly00300 Lysine biosynthesis 4
sly00260 Glycine, serine and threonine metabolism 3
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 7
osa00300 Lysine biosynthesis 5
osa00470 D-Amino acid metabolism 3
osa01240 Biosynthesis of cofactors 3
osa00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 5
zma03010 Ribosome 3
zma00300 Lysine biosynthesis 2
zma00470 D-Amino acid metabolism 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 4
vvi03018 RNA degradation 3
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo00590 Arachidonic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr00300 Lysine biosynthesis 2
mtr00470 D-Amino acid metabolism 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00010 Glycolysis / Gluconeogenesis 4
mtr00620 Pyruvate metabolism 4
mtr01200 Carbon metabolism 4
mtr00020 Citrate cycle (TCA cycle) 3
mtr00785 Lipoic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 9
tae00340 Histidine metabolism 3
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00300 Lysine biosynthesis 3
tae00470 D-Amino acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 10
tae00250 Alanine, aspartate and glutamate metabolism 4
tae00340 Histidine metabolism 3
tae00300 Lysine biosynthesis 3
tae00470 D-Amino acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 4
hvu01200 Carbon metabolism 3
hvu01240 Biosynthesis of cofactors 3
hvu00030 Pentose phosphate pathway 2
hvu00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 9
ghi00300 Lysine biosynthesis 2
ghi00470 D-Amino acid metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 9
ghi00300 Lysine biosynthesis 2
ghi00470 D-Amino acid metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00300 Lysine biosynthesis 2
bna00470 D-Amino acid metabolism 2
bna01230 Biosynthesis of amino acids 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00300 Lysine biosynthesis 2
bna00470 D-Amino acid metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 5
sbi00300 Lysine biosynthesis 4
sbi00470 D-Amino acid metabolism 3
sbi01240 Biosynthesis of cofactors 3
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00300 Lysine biosynthesis 4
sbi01230 Biosynthesis of amino acids 4
sbi00470 D-Amino acid metabolism 3
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 5
sot00300 Lysine biosynthesis 4
sot00061 Fatty acid biosynthesis 4
sot00620 Pyruvate metabolism 4
sot01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 6
bdi00300 Lysine biosynthesis 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
bdi00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 7
nta00300 Lysine biosynthesis 5
nta00470 D-Amino acid metabolism 5
nta00270 Cysteine and methionine metabolism 2
nta00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 6
nta00300 Lysine biosynthesis 5
nta00470 D-Amino acid metabolism 5
nta00270 Cysteine and methionine metabolism 2
nta00920 Sulfur metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824526 100784731 100807528 101246955 4352558 100191234 103841284 103867199 100241380 7460375 7487330 11433124 25499307 123110705 123102524 123398613 107948874 107899279 106390801 106451032 5723295 110429778 8068862 102588220 102618536 100842496 107779873 107796792
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