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Orthologous genes in OrthoFinder**

Species Gene Description
 hvu-r.1   123402574   (6-4)DNA photolyase 
 tae-r.2   123144349   (6-4)DNA photolyase 
 bdi-r.1   100823069   (6-4)DNA photolyase 
 osa-u.5   4328669   (6-4)DNA photolyase 
 zma-u.5   100280217   uncharacterized LOC100280217 
 sbi-r.1   8082933   (6-4)DNA photolyase 
 ath-u.5   UVR3   DNA photolyase family protein 
 gma-u.5   100780347   (6-4)DNA photolyase 
 sly-u.5   101262697   (6-4)DNA photolyase 
 bra-r.6   103840624   (6-4)DNA photolyase 
 vvi-u.5   100256713   (6-4)DNA photolyase 
 ppo-u.5   7475723   (6-4)DNA photolyase 
 mtr-u.5   25491344   (6-4)DNA photolyase 
 ghi-r.1   107962174   (6-4)DNA photolyase 
 ghi-r.1   107901744   (6-4)DNA photolyase 
 bna-r.1   106349575   (6-4)DNA photolyase-like 
 bna-r.1   106387503   (6-4)DNA photolyase 
 sot-r.1   102605735   (6-4)DNA photolyase 
 cit-r.1   102617013   (6-4)DNA photolyase 
 nta-r.1   107790260   (6-4)DNA photolyase 
 nta-r.1   107773193   (6-4)DNA photolyase 
 cre-r.1   CHLRE_06g278251v5   uncharacterized protein 

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Top 50 coexpressed genes to 123402574 (hvu-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123402574 (hvu-r.1 coexpression data)

CoexMap"123402574"


hvuLOC123402574 | Entrez gene ID : 123402574    
Species hvu tae bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032922 [list] [network] circadian regulation of gene expression  (4 genes)  IEA  
GO:0043153 [list] [network] entrainment of circadian clock by photoperiod  (4 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3241 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5514 genes)  IEA  
GO MF
GO:0071949 [list] [network] FAD binding  (102 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2113 genes)  IEA  
Protein XP_044952432.1 [sequence] [blastp]
XP_044952433.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 1,  cyto 1,  mito 1,  plas 1,  cysk 1,  cysk_plas 1,  mito_plas 1,  cyto_plas 1  (predict for XP_044952432.1)
chlo 9  (predict for XP_044952433.1)
Subcellular
localization
TargetP
other 2  (predict for XP_044952432.1)
other 2  (predict for XP_044952433.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

hvu-r.1
for
123402574
tae-r.2
for
123144349
bdi-r.1
for
100823069
osa-u.5
for
4328669
zma-u.5
for
100280217
sbi-r.1
for
8082933
ath-u.5
for
UVR3
gma-u.5
for
100780347
sly-u.5
for
101262697
bra-r.6
for
103840624
vvi-u.5
for
100256713
ppo-u.5
for
7475723
mtr-u.5
for
25491344
ghi-r.1
for
107962174
ghi-r.1
for
107901744
bna-r.1
for
106349575
bna-r.1
for
106387503
sot-r.1
for
102605735
cit-r.1
for
102617013
nta-r.1
for
107790260
nta-r.1
for
107773193
cre-r.1
for
CHLRE_06g278251v5


Ortholog ID: 11303
Species hvu tae bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC123402574 LOC123144349 LOC100823069 LOC4328669 LOC100280217 LOC8082933 UVR3 LOC100780347 LOC101262697 LOC103840624 LOC100256713 LOC7475723 LOC25491344 LOC107962174 LOC107901744 LOC106349575 LOC106387503 LOC102605735 LOC102617013 LOC107790260 LOC107773193 CHLRE_06g278251v5
Function* (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase uncharacterized LOC100280217 (6-4)DNA photolyase DNA photolyase family protein (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase-like (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00941 Flavonoid biosynthesis 4
bdi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 4
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
sot00941 Flavonoid biosynthesis 2
sot04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123402574 123144349 100823069 4328669 100280217 8082933 820804 100780347 101262697 103840624 100256713 7475723 25491344 107962174 107901744 106349575 106387503 102605735 102617013 107790260 107773193 5723611
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